View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_5 (Length: 469)
Name: NF11058_low_5
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 31911919 - 31911451
Alignment:
| Q |
1 |
caagagcaaacaaatcagcacatgcaccaaaaacagttgacaacacaaacgcatcacggtgcaccgtttccaaagggtctaaattcatctccttaaaaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31911919 |
caagagcaaacaaatcagcacatgcaccaaaaacagttgacaacacaaacgcatcacggtgcaccgtttccaaagggtccaaattcatctccttaaaaag |
31911820 |
T |
|
| Q |
101 |
taaaagcgaatttctaggatacccatgtcgagaataaccatgaatcatcgaattccaaacaagaggattcttcataggcatggcattgaagagagcctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31911819 |
taaaagcgaatttctaggatacccatgtcgagaataaccatgaatcatcgaattccaaacaagaggattcttcataggcatggcattgaagagagcctga |
31911720 |
T |
|
| Q |
201 |
gcttgttgaagatcacccgacttggaaagcgtcgaaacaatgaggttccaggagtaatgggttttgtggggcatggcatggaacaattccagtgacttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31911719 |
gcttgttgaagatcacccgacttggaaagcgtcgaaacaatgaggttccaggagtaatgggttttgtggggcatggcatggaacaattccagtgacttgt |
31911620 |
T |
|
| Q |
301 |
ttctgtgacctaagttaatgtgagcttcaatgagggtgttccatgagaaaggatttggttgcggcatttcgtcgaacagtttggatgcatcatggagaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31911619 |
ttctgtgacctaagttaatgtgagcttcaatgagggtgttccatgagaaaggatttggttgcggcatttcgtcgaacagtttggatgcatcatggagaga |
31911520 |
T |
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| Q |
401 |
gccgcggcgcgagtataattggaggaggcggttggtggtgatgacagatgaatgcagattaccggtttt |
469 |
Q |
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| T |
31911519 |
gccgcggcgtgagtataattggaggaggcggttggtggtgatgacggatgaatgcagattaccggtttt |
31911451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 40651234 - 40650854
Alignment:
| Q |
1 |
caagagcaaacaaatcagcacatgcaccaaaaacagttgacaacacaaacgcatcacggtgcaccgtttccaaagggtctaaattcatctccttaaaaag |
100 |
Q |
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||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| ||||| || ||| ||||||||||||| || |
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| T |
40651234 |
caagaacaaacaaatcagcacacgccccaaaaacagttgacaacacaaacgcatcacggtgcatcgtttctaaaggatcaaaaatcatctccttaaatag |
40651135 |
T |
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| Q |
101 |
taaaagcgaatttctaggatacccatgtcgagaataaccatgaatcatcgaattccaaacaagaggattcttcataggcatggcattgaagagagcctga |
200 |
Q |
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||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
40651134 |
taaaatcgcttttctgggatacccatgtcgagaataaccatgaatcatcgaattccaaacaagaggattcttcataggcatagcattgaagagattatga |
40651035 |
T |
|
| Q |
201 |
gcttgttgaagatcacccgacttggaaagcgtcgaaacaatgaggttccaggagtaatgggttttgtggggcatggcatggaacaattccagtgacttgt |
300 |
Q |
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|||||||||||||||||||| ||||||| |||||||||| ||||||| || |||||| ||||||||||||| || || ||||||||||||||||| | |
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| T |
40651034 |
gcttgttgaagatcacccgatttggaaaatgtcgaaacaagttggttccacgaataatggcttttgtggggcatagcgtgaaacaattccagtgactttt |
40650935 |
T |
|
| Q |
301 |
ttctgtgacctaagttaatgtgagcttcaatgagggtgttccatgagaaaggatttggttgcggcatttcgtcgaacagtt |
381 |
Q |
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||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40650934 |
ttctgtgactcaagttgatatgagcttcaatgagggtgttccatgagaaaggatttggttgcggcatttcgtcgaacagtt |
40650854 |
T |
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