View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11058_low_6 (Length: 466)
Name: NF11058_low_6
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 54798348 - 54798656
Alignment:
| Q |
19 |
agtttgcctttggaacgacaaatataatgagtttaacttgaaagctaaactgaaagtaaaagttacaactttgagctaaagctgttacaccaagttcttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54798348 |
agtttgcctttggaacgacaaatataatgagtttaacttgaaag------------taaaagttacaactttgagctaaagctgttacaccaagttcttg |
54798435 |
T |
|
| Q |
119 |
gaaagtaatcaaaatcaaaagtcgtgttttttagtgtgtacgatcacaacttccacgtgcaatgaactaag---------------tgttttgtgttttg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54798436 |
gaaagtaatcaaaatcaaaagtcgtgttttttagtgtgtacgatcacaacttccacgtgcaatgaactaagattactactgtccagtgttttgtgttttg |
54798535 |
T |
|
| Q |
204 |
ttagacatgtaaatatggtttgcatatgccatgttaatttctgtgactacttttacctgaaaacttcattaaattaatggcaagtcatacattgaacatg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54798536 |
ttagacatgtaaatatggtttgcatatgccatgttaatttctgtgactacttttacctgaaaacctcattaaattaatggcaagtcatacattgaacatg |
54798635 |
T |
|
| Q |
304 |
tggttttgtcacatggtgcta |
324 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
54798636 |
tggttttgtcacatggtgcta |
54798656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 372
Target Start/End: Original strand, 54798674 - 54798705
Alignment:
| Q |
341 |
acaaggtcatacatacattgaacatgattaga |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
54798674 |
acaaggtcatacatacattgaacatgattaga |
54798705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University