View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_7 (Length: 466)
Name: NF11058_low_7
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 450
Target Start/End: Original strand, 42068507 - 42068928
Alignment:
| Q |
14 |
agagtccaagttgtaaagatatttagtg-cctcactagtgtcaaagactctaattgagagttttattcccccaaccctttctaatcaaccggatcaatgc |
112 |
Q |
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| T |
42068507 |
agagtccaagttgtaaagatatttagtggcctcactagtgtcaaagactctaattgagagttttattctcccaaccctttctaatcaaccggatcaatgc |
42068606 |
T |
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| Q |
113 |
ggattcactaacgggcnnnnnnncatgtttctatcaagatgcaccaatccagagaggtggaaaaatgatgnnnnnnnngtccgaaatggtgaattcaggc |
212 |
Q |
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| T |
42068607 |
ggattcactaacgggcaaaaaaacatgtttctatcaagatgcaccaatccagag--gtggaaaaatgatgttttttttgtccgaaatggtgaattcaggc |
42068704 |
T |
|
| Q |
213 |
atatccggtttttaagaaagagcaagggagaaatagctttcactctaattatcatgagtttcaaaataataataaagaaattagtaatatctggagtttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42068705 |
atatccggtttttaagaaagagcaagggagaaatagctttcactctaattatcatgagtttcaaaataataataaagaaattagtaatatctggagtttt |
42068804 |
T |
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| Q |
313 |
ggactgatctttatgaatgctaaattcatttaacaaagag-aaaacaaaatacaaaaacctcattgttatacacctcatctctttcaataaagcctcttt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42068805 |
ggactgatctttatgaatgctaaattcatttaacaaagagaaaaacaaaatacaaaa---------------acctcatctctttcaataaagcctcttt |
42068889 |
T |
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| Q |
412 |
gccatatatcatagagtcgaaatgcaactgtcagaaaag |
450 |
Q |
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| T |
42068890 |
gccatatatcatagagtcgaaatgcaactgtcagaaaag |
42068928 |
T |
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