View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_8 (Length: 429)
Name: NF11058_low_8
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 3960785 - 3961204
Alignment:
| Q |
13 |
gttcaacctctccaaactccaccgctaagataaaactttcaccgcctccgcaatatcttccactgcactaacctcgttcttaaaaatgatttgattcctc |
112 |
Q |
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| T |
3960785 |
gttcaacctctccaaactccaccgctaagataaaactttcaccgcctccacaatatcttccaccgcactaacctcgttcttaaaaatgatttgatttctc |
3960884 |
T |
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| Q |
113 |
gtttgccaaatggccgaaatcgttgcatgccaaataagatgcaaacccttccggatcctcttgtttctaccttctaaacttcaacactcccaatgca--- |
209 |
Q |
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| T |
3960885 |
gcttgccaaatggcccaaatcattgcatgccaaataagacgcaaatccttctggatcctcttgtttctaccttttaaactccaacactcccaatgcacaa |
3960984 |
T |
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| Q |
210 |
---agttaggtggatttatgaaacagatttcga-ccacataatcaccttataccaaatatcaatcaccttttcacaatggataaaaagatggttagccga |
305 |
Q |
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| T |
3960985 |
acaagttaggaggatatatgaaacagatttctaaccacataatcaccttataccaaatatcaatcaccttttcacaatggataaaatgatggttagccga |
3961084 |
T |
|
| Q |
306 |
ttcgtccctcctaccacaaaacacacataacgaccaagcatccggaggaagaataatccgcctttgaagattgactctagttggaatccgatctaggaga |
405 |
Q |
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| T |
3961085 |
ttcgtccctcctaccacaaaacacgcacaacaacgaagcatccggaggaagaatatcccgcctttgaagattgactcgcgttggaatccaatctaggaga |
3961184 |
T |
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| Q |
406 |
agtttccaagaaaaatccac |
425 |
Q |
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| T |
3961185 |
agtttccaagaaaaagccac |
3961204 |
T |
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Back To:
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 9359434 - 9359539
Alignment:
| Q |
104 |
tgattcctcgtttgccaaatggccgaaatcgttgcatgccaaataagatgcaaacccttccggatcctcttgtttctaccttctaaacttcaacactccc |
203 |
Q |
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| T |
9359434 |
tgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccccttgcgaatcttcttgtttctcccttcaatactccaacatgccc |
9359533 |
T |
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| Q |
204 |
aatgca |
209 |
Q |
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| T |
9359534 |
aatgca |
9359539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 43976464 - 43976512
Alignment:
| Q |
277 |
tcacaatggataaaaagatggttagccgattcgtccctcctaccacaaa |
325 |
Q |
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| T |
43976464 |
tcacaatgaataaaaagatggattgccgactcgtccatcctaccacaaa |
43976512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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