View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_9 (Length: 404)
Name: NF11058_low_9
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 8252320 - 8251947
Alignment:
| Q |
20 |
gtaacaacagaggacgttcgggggatagggaaggagattgggataaaatttgcaggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8252320 |
gtaacaacagaggacgttcgggggatagggaaggagattgggataaaatttgcaggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaa |
8252221 |
T |
|
| Q |
120 |
aaaataaagagggtgataggcaagggaagtgagttgaggaagtgagggtgtggagggaggtcggggtggtggtctttgtgggtattggtgggtaaaatga |
219 |
Q |
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|||||||| | |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8252220 |
aaaataaataaggtgatgggcaagggaagtgagttgaggaagtgagggcgtggagggaggtcggggtggtggtctttgtgggtgttggtgggtaaaatga |
8252121 |
T |
|
| Q |
220 |
agctcatttcttggaatgtacggggtttggggggacatgagaagaggagggaggtgagacaattggtgagggaaaagtgtccgcttattctttgtattca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | |
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| T |
8252120 |
agctcatttcttggaatgtacggggtttggggggacatgagaagaggagggaggtgagacagttggtgagggagaagtgtccgcttattctttgtattaa |
8252021 |
T |
|
| Q |
320 |
ggaaacaaagtgtggtattttttatgatataatgtgtaattctatctggggcgatgcaaatgttggttattctt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8252020 |
ggaaacaaagtgtggtattttttatgatataatgtgtaattctatctggggcgatgcaaatgttggttattctt |
8251947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 31121326 - 31121360
Alignment:
| Q |
258 |
gagaagaggagggaggtgagacaattggtgaggga |
292 |
Q |
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| T |
31121326 |
gagaagaggagggaggtgagacaattggtgaggga |
31121360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 40 - 393
Target Start/End: Complemental strand, 44894470 - 44894115
Alignment:
| Q |
40 |
ggggatagggaaggagattgggataaaatttgcaggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtgatagg |
139 |
Q |
| |
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||||||||| ||||||||||| ||||||||| || ||||| ||||||||||||||||| ||||||||| ||||| |||||||||||||||||| | || |
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| T |
44894470 |
ggggataggaaaggagattggactaaaatttggcggagataataataatatgtttgatgttttgtctagtctgagacgaaaaaataaagagggtgttggg |
44894371 |
T |
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| Q |
140 |
caagggaagtgagttgaggaagtgagggtgtggagggaggtcgg-----ggtggtggtctttgtgggtattggtgggtaaaatgaagctcatttcttgga |
234 |
Q |
| |
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| |||||||||||| ||| ||| ||| ||||||| ||||||| |||||||| | ||| ||| | | |||||||||||||||| |||| |
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| T |
44894370 |
aaggggaagtgagttaagggggtgtgggagtggaggtaggtcggtttttggtggtggagtgggtgtagattttt---ttaaatgaagctcatttcatgga |
44894274 |
T |
|
| Q |
235 |
atgtacggggtttggggggacatgagaagaggagggaggtgagacaattggtgagggaaaagtgtccgcttattctttgtattcaggaaacaaagtgtgg |
334 |
Q |
| |
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| || ||||||||||| || |||||||||||||||||||||||| ||||||| ||| || |||| ||||||| |||||||||||||||||||||| |
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| T |
44894273 |
acgttcggggtttgggaggttttgagaagaggagggaggtgagacagttggtgacggagaaaagtccttttattctatgtattcaggaaacaaagtgtgt |
44894174 |
T |
|
| Q |
335 |
tattttttatgatataatgtgtaattctatctggggcgatgcaaatgttggttattctt |
393 |
Q |
| |
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||| ||| ||||||| | ||||| ||||| ||| |||||||||||||||||||||||| |
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| T |
44894173 |
tatgtttgatgatatgttatgtaaatctatttggagcgatgcaaatgttggttattctt |
44894115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 80 - 393
Target Start/End: Complemental strand, 19157070 - 19156759
Alignment:
| Q |
80 |
aaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtgataggcaagggaagtgagttgaggaagtgagggtgtggagggagg |
179 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| | || ||||||||||||||| || |||||||||| ||| ||| |
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| T |
19157070 |
aaaaatattatgtttgatgtgttatctagtgtgagaccaaaaaataaagagggtgttgggaaagggaagtgagttg-ggtggtgagggtgtcgagaaagg |
19156972 |
T |
|
| Q |
180 |
tcggggtggtggtctttgtgggtattggtgggtaaaatgaagctcatttcttggaatgtacggggtttggggggacatgagaagaggagggaggtgagac |
279 |
Q |
| |
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|| |||||| |||||| | || | | ||||||||| ||||| ||||||||| ||||| ||||| | ||| ||||||||||||||||||| |
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| T |
19156971 |
agtggtaggtggtgga-gtgggtttcagttgttttaatgaagcttatttcatggaatgtaaggggtctggggagttttgaaaagaggagggaggtgagac |
19156873 |
T |
|
| Q |
280 |
aattggtgagggaaaagtgtccgcttattctttgtattcaggaaacaaagtgtggtattttttatgatataatgtgtaattctatctggggcgatgcaaa |
379 |
Q |
| |
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||||||||||| | |||||||| |||||||||||||||||||| | || |||| || |||| ||||||| |||||| | | || |||||||| |||| |
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| T |
19156872 |
aattggtgaggtagaagtgtccttttattctttgtattcaggaatccaaatgtgttaattttgatgatatgatgtgtcaaaccatttggggcgacccaaa |
19156773 |
T |
|
| Q |
380 |
tgttggttattctt |
393 |
Q |
| |
|
|||| ||||||||| |
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| T |
19156772 |
tgtttgttattctt |
19156759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 12786977 - 12786890
Alignment:
| Q |
39 |
gggggatagggaaggagattgggataaaatttgcaggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataa |
126 |
Q |
| |
|
||||||||||||||| | |||| | |||||| ||||||||||||||| ||||||||||||||||||| | | ||||||||||||| |
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| T |
12786977 |
gggggatagggaaggcggttggacttaaatttaatggggataaaaataatctgtttgatgtgttgtctagggagggaagaaaaaataa |
12786890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 13154231 - 13154307
Alignment:
| Q |
73 |
aggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtgataggcaagggaagt |
149 |
Q |
| |
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|||||| || ||||||| |||||||||||||| | ||| ||||||||||||||||||| ||| || ||||||||| |
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| T |
13154231 |
aggggacaagaataataaatttgatgtgttgtcaggggtgggaagaaaaaataaagagggagatgggaaagggaagt |
13154307 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 33096217 - 33096280
Alignment:
| Q |
73 |
aggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtgat |
136 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||| ||| | ||||||||||||||||||||||| |
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|
| T |
33096217 |
aggggataagaataatcagttcgatgtgttgtcaggtgcgggaagaaaaaataaagagggtgat |
33096280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 21582457 - 21582401
Alignment:
| Q |
80 |
aaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtgat |
136 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| ||||||| |||||||||||||| |
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|
| T |
21582457 |
aaaaataatatgtttgatgtgttgtcaagggtgggaagaaattataaagagggtgat |
21582401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 43770279 - 43770330
Alignment:
| Q |
73 |
aggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaat |
124 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
43770279 |
aggggacaaaaataatatgtttgatgtgttgtcatgggtgggaagaaaaaat |
43770330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 16541645 - 16541707
Alignment:
| Q |
73 |
aggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtga |
135 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| | | | ||||||||||||| |||||||| |
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| T |
16541645 |
aggggacaaaaagaatatgtttgatgtgttgtccggagcgggaagaaaaaataaggagggtga |
16541707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 16624017 - 16623955
Alignment:
| Q |
73 |
aggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtga |
135 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| | | | ||||||||||||| |||||||| |
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|
| T |
16624017 |
aggggacaaaaagaatatgtttgatgtgttgtccggagcgggaagaaaaaataaggagggtga |
16623955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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