View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11059_high_11 (Length: 218)
Name: NF11059_high_11
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11059_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 27646793 - 27646929
Alignment:
| Q |
1 |
atgttcctaagatcaaagagatgatgtggctccctccagtttacctctggattaagtgtaacattatggcattgctgatggtagtcatggtcccgcatct |
100 |
Q |
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| T |
27646793 |
atgttcctaagatcaaagatatgatgtggctccctccggtttacctctggattaagtgtaacattatggcattgctcatggtagtcatggtcccgcatct |
27646892 |
T |
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| Q |
101 |
tgtggtggtatatttagagattaccaagctaattttc |
137 |
Q |
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| T |
27646893 |
tgtggtggtatatttagagattaccaagctaattttc |
27646929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 27647119 - 27647182
Alignment:
| Q |
129 |
ctaattttcttggttgnnnnnnnaacaccttatgtattgtcatggttattgttggtggctatta |
192 |
Q |
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| T |
27647119 |
ctaattttcttggttgtttttttaacaccttatgtattgtcatggttattgttggtggctatta |
27647182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 21186891 - 21187006
Alignment:
| Q |
22 |
tgatgtggctccctccagtttacctctggattaagtgtaacatt-atggcattgctgatggtagtcatggtcccgcatcttgtggtggtatatttagaga |
120 |
Q |
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| T |
21186891 |
tgatgtggctcccttcggttcacatctgaattaagtataacactgattgtgttgttaatggtagtcttagtccagcttcctatggtggtatttttagaga |
21186990 |
T |
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| Q |
121 |
ttaccaagctaatttt |
136 |
Q |
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| T |
21186991 |
ttaccaagctaatttt |
21187006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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