View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11059_high_12 (Length: 202)
Name: NF11059_high_12
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11059_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 1432426 - 1432285
Alignment:
| Q |
45 |
ccatattgaaaagccattctctaatataattatgaagtcttacacaatcacaaagtattatcatcaccaattctgttcaatcggtgacgtttgagattaa |
144 |
Q |
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| T |
1432426 |
ccatattgaaaagccattctctaatataattatgaagtcttacacaatcacaaagtattatcatcaccaattctgttcaatcggtgacgtttgagattaa |
1432327 |
T |
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| Q |
145 |
gcacttaacaatcaagaaacaacctaatctagtgatgcacac |
186 |
Q |
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| T |
1432326 |
gcacttaacaatcaagaaacaacctaatctagtgatgcacac |
1432285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 1438175 - 1438138
Alignment:
| Q |
146 |
cacttaacaatcaagaaacaacctaatctagtgatgca |
183 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
1438175 |
cactgaacaatcaagaaacaacctaatctagtgatgca |
1438138 |
T |
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