View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11059_high_5 (Length: 319)
Name: NF11059_high_5
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11059_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 42655116 - 42655405
Alignment:
| Q |
14 |
aagaaccaaatactcatcatcaggcaaaccacaatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaaggaggat |
113 |
Q |
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| T |
42655116 |
aagaaccaaatactcatcatcaggcaaaccacaatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaaggaggat |
42655215 |
T |
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| Q |
114 |
tttttgttgagaatatcaagtagtcttgatggctctaactgtgttctatccatctcaggaaggttgcttccaaaagaaggcgatcttggtgactttcttc |
213 |
Q |
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| T |
42655216 |
tttttgttgagaatatcaagtagtcttgatggctctaactgtgttctatccatctcaggaaggttgcttccaaaagaaggcgatcttggtgactttcttc |
42655315 |
T |
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| Q |
214 |
tatcatctgacattggtaattccgaaggctcctcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttg |
303 |
Q |
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| T |
42655316 |
tatcatctgacattggtaattccgaaggctcctcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttg |
42655405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 43052867 - 43052576
Alignment:
| Q |
15 |
agaaccaaatactcatcatcaggcaaaccacaatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaaggaggatt |
114 |
Q |
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| T |
43052867 |
agaaccaaatactcagcatcaggcaaaccacaatgcttcaaaaccttattctgagcttgaatttccgggatcgagatgaatcttccaggaaaggatgatt |
43052768 |
T |
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| Q |
115 |
ttttgttgagaatatcaagtagtcttgatggctctaactgtgttctatccatctcaggaaggttgcttccaaa---agaaggcgatcttggtgactttct |
211 |
Q |
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| T |
43052767 |
ttttattgagaatatcaagtagtcttgatggctctagctgtgtcatatccatttcaggagggtcgcttccaaaattataagatggtcttaatgactttct |
43052668 |
T |
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| Q |
212 |
tctatcatctgacattggtaattccgaaggctcctcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttg |
303 |
Q |
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| T |
43052667 |
actatcatctgacagtggtaattttaaaggctccccattgatcataaaactggacatatctgtaccacttccatcgccttcaatgagatttg |
43052576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 45479363 - 45479467
Alignment:
| Q |
46 |
aatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaaggaggattttttgttgagaatatcaagtagtcttgatgg |
145 |
Q |
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|||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| | ||| |||||||| ||||||||||||||||||| |||||| | |
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| T |
45479363 |
aatgcttcaaaaccttattttgagcttgaatttcggggatcgatatgaaacttccggtaaatgaggatttcttgttgagaatatcaagtaaccttgattg |
45479462 |
T |
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| Q |
146 |
ctcta |
150 |
Q |
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||||| |
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| T |
45479463 |
ctcta |
45479467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 45479581 - 45479630
Alignment:
| Q |
246 |
tcattgatgataaaacttgacatgtctataccacttccatctccttcaat |
295 |
Q |
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| T |
45479581 |
tcattgatgataaaggtagacatgtctatcccatttccatctccttcaat |
45479630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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