View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11059_high_8 (Length: 252)

Name: NF11059_high_8
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11059_high_8
NF11059_high_8
[»] chr3 (7 HSPs)
chr3 (1-243)||(36100002-36100242)
chr3 (1-169)||(16860164-16860332)
chr3 (1-169)||(42374241-42374410)
chr3 (1-96)||(4330241-4330336)
chr3 (161-243)||(16859353-16859436)
chr3 (1-76)||(21626764-21626839)
chr3 (30-87)||(21336080-21336137)
[»] chr4 (4 HSPs)
chr4 (1-169)||(14199784-14199952)
chr4 (1-135)||(36040091-36040224)
chr4 (165-243)||(14198974-14199053)
chr4 (1-35)||(37080121-37080155)
[»] chr7 (4 HSPs)
chr7 (1-169)||(46741920-46742088)
chr7 (1-169)||(46372204-46372371)
chr7 (1-98)||(29054267-29054365)
chr7 (161-243)||(46742264-46742347)
[»] chr1 (7 HSPs)
chr1 (1-169)||(35567340-35567508)
chr1 (1-169)||(37382578-37382745)
chr1 (4-169)||(41768648-41768812)
chr1 (1-169)||(50986393-50986560)
chr1 (30-169)||(4296312-4296450)
chr1 (1-98)||(11166290-11166387)
chr1 (11-69)||(10724825-10724883)
[»] chr6 (2 HSPs)
chr6 (1-169)||(17003202-17003369)
chr6 (4-169)||(25461001-25461165)
[»] chr5 (6 HSPs)
chr5 (1-169)||(34985900-34986068)
chr5 (1-131)||(20406935-20407065)
chr5 (1-96)||(2852535-2852630)
chr5 (11-96)||(2842402-2842487)
chr5 (9-53)||(42867047-42867091)
chr5 (68-105)||(42867091-42867128)
[»] chr2 (1 HSPs)
chr2 (30-169)||(13099086-13099224)
[»] chr8 (2 HSPs)
chr8 (4-113)||(13439052-13439161)
chr8 (1-102)||(44842561-44842662)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 36100002 - 36100242
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36100002 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaactatacaaatatgaaattggatgtgattttgttt 36100101  T
Q  101 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaattaaagaaatatgagtttaatgatcattttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  36100102 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaattaaagaa--atgagtttaatgatcattttc 36100199  T
Q  201 atggttttgtaaagatgaaaataaattattttacctgtctgtg 243  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  36100200 atggttttgtaaagatgaaaagaaattattttacctgtctgtg 36100242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 16860332 - 16860164
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16860332 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 16860233  T
Q  101 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16860232 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 16860164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 42374241 - 42374410
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42374241 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 42374340  T
Q  101 tatttctagagatgtaa-aaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    |||||||||||||||||    ||| ||||||||||||| |||||||||||| ||||||||||||||||||    
T  42374341 tatttctagagatgtaattttttttttttgtagatgaaccttttttagttccgatgctactgataaaaaa 42374410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 4330336 - 4330241
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgatttt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4330336 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtaatttt 4330241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 16859436 - 16859353
Alignment:
Q  161 gataaaaaattaaagaaata-tgagtttaatgatcattttcatggttttgtaaagatgaaaataaattattttacctgtctgtg 243  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16859436 gataaaaaattaaagaaataatgagtttaatgatcattttcatggttttgtaaagatgaaaagaaattattttacctgtctgtg 16859353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 21626839 - 21626764
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaat 76  Q
    |||||||| |||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  21626839 ctgggctgctgtcttcatcaaggtcaagttgcttatatattttgtttccattacatgcaacaacaacaatacaaat 21626764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 21336137 - 21336080
Alignment:
Q  30 tctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattgga 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21336137 tctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattgga 21336080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 14199952 - 14199784
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14199952 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 14199853  T
Q  101 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14199852 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 14199784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 36040091 - 36040224
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36040091 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 36040190  T
Q  101 tatttctagagatgtaaaaatttcttttgtagatg 135  Q
    ||||||||||||||| ||| ||| |||||||||||    
T  36040191 tatttctagagatgt-aaatttttttttgtagatg 36040224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 14199053 - 14198974
Alignment:
Q  165 aaaaattaaagaaata-tgagtttaatgatcattttcatggttttgtaaagatgaaaataaattattttacctgtctgtg 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14199053 aaaaattaaagaaataatgagtttaatgatcattttcatggttttgtaaagatgaaaagaaattattttacctgtctgtg 14198974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37080155 - 37080121
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttcttta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  37080155 ctgggctgttgtcttcatcacggtcaagttcttta 37080121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 46741920 - 46742088
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46741920 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacagtacaaatatgaaattggatgtgattttgttt 46742019  T
Q  101 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46742020 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 46742088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 46372204 - 46372371
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46372204 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 46372303  T
Q  101 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  46372304 tatttctagagatgt-aaatttttttttgtagatgaatcttttttagttccgatgctactgataaaaaa 46372371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 29054267 - 29054365
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatg-aaattggatgtgattttgt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  29054267 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaaattggatgtgatgttgt 29054365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 46742264 - 46742347
Alignment:
Q  161 gataaaaaattaaagaaata-tgagtttaatgatcattttcatggttttgtaaagatgaaaataaattattttacctgtctgtg 243  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  46742264 gataaaaaattaaagaaataatgagtttaatgatcattttcatgattttgtaaagatgaaaagaaattattttacctgtctgtg 46742347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 35567508 - 35567340
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35567508 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 35567409  T
Q  101 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35567408 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttccgatgctactgataaaaaa 35567340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 37382745 - 37382578
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37382745 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 37382646  T
Q  101 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  37382645 tatttctagagatgt-aaatttttttttgtagatgaatcttttttagttccgatgctactgataaaaaa 37382578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 41768812 - 41768648
Alignment:
Q  4 ggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttttat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41768812 ggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttttat 41768713  T
Q  104 ttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  41768712 ttctagagatgt-aaatttttttttgtagatgaatcttttttagttccgatgctactgataaaaaa 41768648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 50986560 - 50986393
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50986560 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaaaacaaatatgaaattggatgtgattttgttt 50986461  T
Q  101 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  50986460 tatttctagagatgt-aaatttttttttgtagatgaatcttttttagttccgatgctactgataaaaaa 50986393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 30 - 169
Target Start/End: Original strand, 4296312 - 4296450
Alignment:
Q  30 tctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttttatttctagagatgtaaaaatttcttttg 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||    
T  4296312 tctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttttatttctagagatgt-aaatttttttttg 4296410  T
Q  130 tagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  4296411 tagatgaatctcttttagttccgatgctactgataaaaaa 4296450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 11166290 - 11166387
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11166290 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgatgttgt 11166387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 10724883 - 10724825
Alignment:
Q  11 gtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaa 69  Q
    |||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10724883 gtcttcttccaggtcaagttctttacatattatgttttcattacatgcaacaacaacaa 10724825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 17003369 - 17003202
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17003369 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 17003270  T
Q  101 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    ||| ||||||||||| ||| ||| ||||||| |||||||||||||||||| ||||||||||||||||||    
T  17003269 tatgtctagagatgt-aaatttttttttgtacatgaatcttttttagttccgatgctactgataaaaaa 17003202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 25461165 - 25461001
Alignment:
Q  4 ggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttttat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25461165 ggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttttat 25461066  T
Q  104 ttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    |||||||||| ||||||      |||||||||||||||||||||||| ||||||||||||||||||    
T  25461065 ttctagagatataaaaa-aaaaattgtagatgaatcttttttagttccgatgctactgataaaaaa 25461001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 34986068 - 34985900
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34986068 ctgggttgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcagcaacaacaatacaaatatgaaattggatgtgattttgttt 34985969  T
Q  101 tatttctagagatgtaaaaatttcttttgtagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    |||||||||||||||||   ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  34985968 tatttctagagatgtaatttttttttttgtagatgaatcttttttagttccgatgctactgataaaaaa 34985900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 20406935 - 20407065
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20406935 ctgggttgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 20407034  T
Q  101 tatttctagagatgtaaaaatttcttttgta 131  Q
    ||||||||||||||||||  ||| |||||||    
T  20407035 tatttctagagatgtaaattttttttttgta 20407065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2852535 - 2852630
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgatttt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2852535 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgatttt 2852630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 2842402 - 2842487
Alignment:
Q  11 gtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgatttt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2842402 gtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatctgaaattggatgtgatttt 2842487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 42867047 - 42867091
Alignment:
Q  9 ttgtcttcatcaaggtcaagttctttacatattttgtttccatta 53  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  42867047 ttgtcttcattgaggtcaagttctttacatattttgtttccatta 42867091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 42867091 - 42867128
Alignment:
Q  68 aatacaaatatgaaattggatgtgattttgttttattt 105  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  42867091 aataaaaatatgaaattggatgtgattttgttctattt 42867128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 13099224 - 13099086
Alignment:
Q  30 tctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttttatttctagagatgtaaaaatttcttttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||    
T  13099224 tctttacatattttgtttccattacatgcaacaacaacaatacaaatttgaaattggatgtgattttgttttatttctagagatgt-aaatttttttttg 13099126  T
Q  130 tagatgaatcttttttagttctgatgctactgataaaaaa 169  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  13099125 tagatgaatcttttttagttccgatgctaccgataaaaaa 13099086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 13439161 - 13439052
Alignment:
Q  4 ggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttttat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13439161 ggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttttat 13439062  T
Q  104 ttctagagat 113  Q
    ||||||||||    
T  13439061 ttctagagat 13439052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 44842561 - 44842662
Alignment:
Q  1 ctgggctgttgtcttcatcaaggtcaagttctttacatattttgtttccattacatgcaacaacaacaatacaaatatgaaattggatgtgattttgttt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44842561 ctgggctgttgtcttcatcaaggtcaagttccttacatattttgtttccattacatgcaacaacaacaatacaaatttgaaattggatgtgattttgttt 44842660  T
Q  101 ta 102  Q
    ||    
T  44842661 ta 44842662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University