View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11059_high_9 (Length: 247)
Name: NF11059_high_9
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11059_high_9 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 13446481 - 13446711
Alignment:
| Q |
18 |
ctccctacacataatgtgaaattagcattttgtgctaaaccatttt-ggaatgtatatatgcaagtatttttcatatgcttacctccaagtaaagaaaat |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446481 |
ctccctacaaataatgtgaaattagcattttgtgctaaaccatttttggaatgtatatatgcaagtatttttcatatgcttacctccaagtaaagaaaat |
13446580 |
T |
|
| Q |
117 |
ataggaagttctagaggctttgctactgcaccaaccattacaagctttccattagatttcaataaaccaatcaatggtacaacaggatgactcgccgaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446581 |
ataggaagttctagaggctttgctactgcaccaaccattaccagctttccattagatttcaataaaccaatcaatggtacaacaggatgactcgccgaaa |
13446680 |
T |
|
| Q |
217 |
ctgtgtcaataatgccattcaaagtactcgt |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13446681 |
ctgtgtcaataatgccattcaaagtactcgt |
13446711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 13418988 - 13419161
Alignment:
| Q |
70 |
tatatatgcaagtatttttcatatgcttacctccaagtaaagaaaatataggaagttctagaggctttgctactgcaccaaccattacaagctttccatt |
169 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
13418988 |
tatatatggaaatatttttcatatgcttacctccaagtaaagaaaatacaggaagctctagaggctttgccactccaccaaccattacaagttttccatt |
13419087 |
T |
|
| Q |
170 |
agatttcaataaaccaatcaatggtacaacaggatgactcgccgaaactgtgtcaataatgccattcaaagtac |
243 |
Q |
| |
|
||||||||||||| ||| |||||||| || |||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13419088 |
agatttcaataaagcaaccaatggtaaaataggatggttcgccgaaactgtgtcaataataccattcaaagtac |
13419161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 13425877 - 13426051
Alignment:
| Q |
69 |
gtatatatgcaagtatttttcatatgcttacctccaagtaaagaaaatataggaagttctagaggctttgctactgcaccaaccattacaagctttccat |
168 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||| ||||||| |
|
|
| T |
13425877 |
gtatatatggaaatatttttcatatgcttacctccaagtaaagaaaatacaggaagctctagaggctttgccaccccaccaaccattacaagttttccat |
13425976 |
T |
|
| Q |
169 |
tagatttcaataaaccaatcaatggtacaacaggatgactcgccgaaactgtgtcaataatgccattcaaagtac |
243 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||| |||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
13425977 |
tagatttcaataaaccaatcaatggtaagataggatgacttgccgaaacagtgtcgataataccattcaaagtac |
13426051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 13453420 - 13453565
Alignment:
| Q |
97 |
tacctccaagtaaagaaaatataggaagttctagaggctttgctactgcaccaaccattacaagctttccattagatttcaataaaccaatcaatggtac |
196 |
Q |
| |
|
||||| ||||||||| ||| | |||||| |||||||||||| | |||||||||||||||||||||||||| ||| || | ||||||||||| |||| |
|
|
| T |
13453420 |
tacctgcaagtaaaggaaaaacaggaagctctagaggcttttcaggtgcaccaaccattacaagctttccatgagacttgagtaaaccaatcagaggtaa |
13453519 |
T |
|
| Q |
197 |
aacaggatgactcgccgaaactgtgtcaataatgccattcaaagta |
242 |
Q |
| |
|
| |||||| ||| ||||||||||| ||||| |||| ||||||| |
|
|
| T |
13453520 |
tagcggatgatccgctgaaactgtgtcgataataccatccaaagta |
13453565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 13412640 - 13412813
Alignment:
| Q |
70 |
tatatatgcaagtatttttcatatgcttacctccaagtaaagaaaatataggaagttctagaggctttgctactgcaccaaccattacaagctttccatt |
169 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || ||| | | || |||||| | | ||||| | ||| | |||||| ||||| ||||||||||| |
|
|
| T |
13412640 |
tatatatggaaatatttttcatatgcttaccttgaattaacgtatattcaggaagctgcaaaggctgtactattacaccaagcattataagctttccatg |
13412739 |
T |
|
| Q |
170 |
agatttcaataaaccaatcaatggtacaacaggatgactcgccgaaactgtgtcaataatgccattcaaagtac |
243 |
Q |
| |
|
||| ||||| | |||||||| ||||| | ||||||| || ||||||||||||||||| |||| |||||||| |
|
|
| T |
13412740 |
agacttcaagagaccaatcattggtaagagaggatgaacagctgaaactgtgtcaataataccatccaaagtac |
13412813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 28431263 - 28431211
Alignment:
| Q |
143 |
tgcaccaaccattacaagctttccattagatttcaataaaccaatcaatggta |
195 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||||||| | ||||||||| |||| |
|
|
| T |
28431263 |
tgcaccaaccataacaagttttccatgagatttcaaaagaccaatcaaaggta |
28431211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University