View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11059_low_1 (Length: 442)
Name: NF11059_low_1
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11059_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 23 - 424
Target Start/End: Original strand, 8072795 - 8073196
Alignment:
| Q |
23 |
agaacacaaatgattgatcacatagttcgactaattgtgcctacgtttccgacagaaaagtggttgatgtagnnnnnnnattatgcaattcttacgattg |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| |
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| T |
8072795 |
agaacacaaatgattgatcacatagttcgactaattgtgcctacgtttccgacagcaaagtggctgatgtagtttttctattatgcaattcttacgattg |
8072894 |
T |
|
| Q |
123 |
caaagtacaatgacgtgtttaaatactatgctccatcgactgactacttatcagagaatacgagtcatactcaacacaatcatcgatctttaagttttgc |
222 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8072895 |
caaagtacaatgtcgtgtttaaatactatgctccatcgactgactacttatcagcgaatacgagtcatactcaacacaatcatcgatctttaagttttgc |
8072994 |
T |
|
| Q |
223 |
tagttccatgaaagctaaaatgcttatttatcgttccatggaagtttaacagtcgttattgtttgctttgtcaggctttagaggattcactggttaagca |
322 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8072995 |
tagttccatgaaagctaaaatgcttatttatcgttccatggaagtttaacagtcgttattgtttgctttgtcaggctttagaggattcactggttaagca |
8073094 |
T |
|
| Q |
323 |
agaggagatttcggcttatgttgagcagaaaaaacagaatagaagaaagtgtgtatgtacacaaccaatgcaatatctatacctactttaactttactac |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8073095 |
agaggagatttcggcttatgttgagcagaaaaaacagaatagaagaaagtgtgtatgtacacaaccaatgcaatatctatacctactttaactttactac |
8073194 |
T |
|
| Q |
423 |
tt |
424 |
Q |
| |
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|| |
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|
| T |
8073195 |
tt |
8073196 |
T |
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