View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11059_low_10 (Length: 284)
Name: NF11059_low_10
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11059_low_10 |
 | |
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| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (5 HSPs) |
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| [»] chr3 (6 HSPs) |
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| [»] chr7 (6 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr1 (9 HSPs) |
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| [»] scaffold0206 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 109 - 284
Target Start/End: Original strand, 44842078 - 44842253
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44842078 |
gtcatttaactttattccacacacaccatatttattttaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
44842177 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44842178 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
44842253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 109 - 284
Target Start/End: Complemental strand, 1376042 - 1375867
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1376042 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
1375943 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1375942 |
cctagccgccgcctcctccctccctcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
1375867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 37080526 - 37080359
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37080526 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
37080427 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37080426 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
37080359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 109 - 284
Target Start/End: Complemental strand, 14200421 - 14200240
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
14200421 |
gtcatttaactttattccacacacatcatatttatttcaaagttaattttctctctcttcaccaaagaaatctagaaaactctctcattctcaaacaaac |
14200322 |
T |
|
| Q |
209 |
cctagccgccgcctc------ctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14200321 |
cctagccgccgcctcctcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
14200240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 109 - 276
Target Start/End: Original strand, 36039743 - 36039908
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36039743 |
gtcatttaactttattccaca--caccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattcttaaacaaac |
36039840 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36039841 |
cctagccgccgcctcctccctcattcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
36039908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 39455513 - 39455631
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39455513 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctagaaaactctctcattctcaaacaaac |
39455612 |
T |
|
| Q |
209 |
cctagccgccgcctcctcc |
227 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
39455613 |
cctagccgacgcctcctcc |
39455631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 109 - 284
Target Start/End: Original strand, 36099657 - 36099832
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36099657 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
36099756 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36099757 |
cctagccgccgccgcctccctccttcagtgtgtctccggcgatcgttacattgctccaccatcttcatcctctcct |
36099832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 16860685 - 16860518
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16860685 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
16860586 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16860585 |
ccccgccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
16860518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 4330688 - 4330522
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4330688 |
gtcatttaactttattccacacacaccacatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaa- |
4330590 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4330589 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggccgttacattgctccaccatcttcat |
4330522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 128 - 284
Target Start/End: Complemental strand, 21627303 - 21627147
Alignment:
| Q |
128 |
cacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaaccctagccgccgcctcctcc |
227 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21627303 |
cacacaccatatttattttaaagttaattttctctctcttcaccaaagaaatctggaaaactctctgattctcaaacaaaccctagccgccgcctcctcc |
21627204 |
T |
|
| Q |
228 |
ctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21627203 |
ctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
21627147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 137 - 284
Target Start/End: Original strand, 42373798 - 42373948
Alignment:
| Q |
137 |
tattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaaccctagccgccgcctcctcc---ctcctt |
233 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
42373798 |
tatttatttcaaagttaattctctctctcttcaccaaagaaatctggaaaactctctcattctcgaacaaaccctagccgccgcctcctcctcactcctt |
42373897 |
T |
|
| Q |
234 |
cagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42373898 |
cagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
42373948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 42373261 - 42373297
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcattt |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42373261 |
gtcatttaactttattccacacacaccatatttattt |
42373297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 109 - 284
Target Start/End: Original strand, 46371739 - 46371914
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46371739 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctatcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
46371838 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46371839 |
cctagccgccgcctcctccctccttcagtgtgtccccggcggtcgttacattgctccaccatcttcatcctctcct |
46371914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 109 - 284
Target Start/End: Original strand, 46741579 - 46741750
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46741579 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactc----attctcaaacaaac |
46741674 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46741675 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
46741750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 109 - 284
Target Start/End: Complemental strand, 19624924 - 19624743
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19624924 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttgtctctcttcaccaaagaaatctggaaaactatctcattctcaaacaaac |
19624825 |
T |
|
| Q |
209 |
cctagccg------ccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
| |||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19624824 |
catagccgcctcctcctcctcctccctccttcagtgtgtctccggcggtcgttacattggtccaccatcttcatcctctcct |
19624743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 109 - 276
Target Start/End: Original strand, 29053927 - 29054081
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29053927 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
29054026 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29054027 |
cctag-------------cctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
29054081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 7671173 - 7671257
Alignment:
| Q |
133 |
accatattcatttcaaagttaattttctctctcttcaccaaag-aaatctggaaaactctctcattctcaaacaaaccctagccg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7671173 |
accatattcatttcaaagttaattttctctctcttcaccaaagaaaatctggaaaactctctcattctcaaacaaaccctagccg |
7671257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 7671255 - 7671295
Alignment:
| Q |
244 |
ccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7671255 |
ccggtggtcgttacattgctccaccatcttcatcctctcct |
7671295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 109 - 284
Target Start/End: Complemental strand, 345298 - 345123
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
345298 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
345199 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
345198 |
cctagccgcagcctcctccctccttcagtgtgtctccgacggtcgttacattgctccaccatcttcatcctctcct |
345123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 13099563 - 13099395
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13099563 |
gtcatttaactttatttcacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
13099464 |
T |
|
| Q |
209 |
cctagc---cgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
|||||| |||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13099463 |
cctagccgtcgcctcctcctccctccttca--gtttctccggcggtcgttacattgctccaccatcttcat |
13099395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 29601386 - 29601474
Alignment:
| Q |
196 |
ttctcaaacaaaccctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29601386 |
ttctcaaacaaacccaagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
29601474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 29601338 - 29601390
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctc |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29601338 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctc |
29601390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 113 - 284
Target Start/End: Complemental strand, 7699396 - 7699225
Alignment:
| Q |
113 |
tttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaacccta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7699396 |
tttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaacccta |
7699297 |
T |
|
| Q |
213 |
gccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7699296 |
gccgccgcctcctccctccttcagtgtttctccggcggtcgttacattgctccaccatcttcatcctctcct |
7699225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 109 - 284
Target Start/End: Complemental strand, 33205359 - 33205184
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33205359 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttgaccaaagaaatctggaaaactctctcattctcaaacaaac |
33205260 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33205259 |
cctagccgccgactcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
33205184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 109 - 284
Target Start/End: Complemental strand, 37383099 - 37382921
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37383099 |
gtcatttaactttattccacacacaccatattgatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
37383000 |
T |
|
| Q |
209 |
cctagccgccgcctc---ctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37382999 |
cctagccgccgcctcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
37382921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 109 - 276
Target Start/End: Original strand, 4295976 - 4296141
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4295976 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
4296075 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4296076 |
cctagccgccgcctcctccctccttca--gtgtctccggcggtcgttacattgctccaccatcttcat |
4296141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 41769125 - 41768955
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41769125 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
41769026 |
T |
|
| Q |
209 |
cctagccgccgcctc---ctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41769025 |
cctagccgccgcctcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
41768955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 109 - 284
Target Start/End: Original strand, 46320999 - 46321177
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
46320999 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctagaaaactctctcattctcaaacaagc |
46321098 |
T |
|
| Q |
209 |
ccta---gccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
46321099 |
cctagccgccgccgcctcctccctccttcagtgtgtctccggcagtcgttacattgctccaccatcttcatcctctcct |
46321177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 35567867 - 35567694
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35567867 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
35567768 |
T |
|
| Q |
209 |
cctagccgccgcctc------ctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
35567767 |
cctagccgccgcctcctcctcctccctccttcagtgtgtctacggcggtcgttacattgctccgccatcttcat |
35567694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 50986883 - 50986725
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
50986883 |
gtcatttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcatt---------ac |
50986793 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50986792 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgatccaccatcttcat |
50986725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 276
Target Start/End: Original strand, 11166066 - 11166104
Alignment:
| Q |
238 |
gtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11166066 |
gtgtctccggcggtcgttacattgctccaccatcttcat |
11166104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 34986439 - 34986272
Alignment:
| Q |
109 |
gtcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34986439 |
gtcatttgactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaac |
34986340 |
T |
|
| Q |
209 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34986339 |
cctagccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
34986272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 114 - 284
Target Start/End: Original strand, 2852105 - 2852273
Alignment:
| Q |
114 |
ttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaaccctag |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2852105 |
ttaactttattccacacacaccatatttatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactct--cattctcaaacaaaccctag |
2852202 |
T |
|
| Q |
214 |
ccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2852203 |
ccgccgccgccaccctccttcagtgtgtctccggcagtcgttacattgctccaccatcttcatcctctcct |
2852273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 113 - 284
Target Start/End: Original strand, 2842018 - 2842185
Alignment:
| Q |
113 |
tttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaacccta |
212 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2842018 |
tttaactttattccacacac--catatttatttcaaagttaattttctc--tcttcaccaaagaaatctggaaaactctctcattctcaaataaacccta |
2842113 |
T |
|
| Q |
213 |
gccgccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcatcctctcct |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2842114 |
gccgccgcctcctccctccttcagtgtgtctccggcggtcgtttcattgctccaccatcttcatcctctcct |
2842185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 42866748 - 42866869
Alignment:
| Q |
161 |
ctctcttcaccaaagaaat-ctggaaaactctctcattctcaaacaaaccctagccgccgcctcctccctccttcagtgtgtctccggcg--gtcgttac |
257 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||||||||| | | || | |
|
|
| T |
42866748 |
ctctcttcaccaaagaaattctgtaaaactctctcattctctaacaaaccctagctgccg---cctccgtccttcagtgtgtctccggcggcgccttttc |
42866844 |
T |
|
| Q |
258 |
attgctccaccatcttcatcctctc |
282 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
42866845 |
attgttccaccatcttcatcctctc |
42866869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 25461496 - 25461381
Alignment:
| Q |
112 |
atttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaatctggaaaactctctcattctcaaacaaaccct |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25461496 |
atttaactttattccacacacaccatatttattttaaagttaattttctatctcttcaccaaagaaatctggaaaactctctcattctcaaacaaaccct |
25461397 |
T |
|
| Q |
212 |
agccgccgcctcctcc |
227 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
25461396 |
agccgcctccgcctcc |
25461381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 25461367 - 25461308
Alignment:
| Q |
217 |
ccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25461367 |
ccgcctcctccctccttcagtgtgtctccggcggtcgttacattgctccaccatcttcat |
25461308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 13399 - 13510
Alignment:
| Q |
110 |
tcatttaactttattccacacacaccatattcatttcaaagttaattttctctctcttcaccaaagaaat-ctggaaaactctctcattc-tcaaacaaa |
207 |
Q |
| |
|
|||||||||||||| | || ||||| |||||||||| | ||| |||||||||| ||||| |||||| | ||||||||||||| || || || | |||| |
|
|
| T |
13399 |
tcatttaactttatccaactcacacatcattcatttcaca-ttatttttctctcttttcactaaagaagttctggaaaactctcccaatcctctatcaaa |
13497 |
T |
|
| Q |
208 |
ccctagccgccgc |
220 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13498 |
ccctagccgccgc |
13510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University