View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11059_low_2 (Length: 427)
Name: NF11059_low_2
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11059_low_2 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 318 - 427
Target Start/End: Original strand, 27646684 - 27646792
Alignment:
| Q |
318 |
tatcatttcaaatgtttctttgagtggtaattacgctaatattgttgcttcttctaagcattttttatttatgatccttgaatcttcctatgttaagatc |
417 |
Q |
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| T |
27646684 |
tatcatttcaaatgtatctttgagtggtaattacgctaatattgttgcttcttct-agcatttttgatttatgatccttgaatctttctatgttaagatc |
27646782 |
T |
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| Q |
418 |
catcctccta |
427 |
Q |
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| T |
27646783 |
catcctccta |
27646792 |
T |
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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 427
Target Start/End: Original strand, 34799045 - 34799226
Alignment:
| Q |
246 |
tgctatttggcattgtagaaacatgtggaggtttcaggctaatctaattccttgcaagacttcgaccaatgttatcatttcaaatgtttctttgagtggt |
345 |
Q |
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| T |
34799045 |
tgctatttgggaccgtagaaacatgtgcaggttccaggataatcgtattccttgtaagacttccatcaatactatcatttcaagtgtttcctttagtgtt |
34799144 |
T |
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| Q |
346 |
aattacgctaatattgttgcttcttctaagcatttttta-tttatgatccttgaatcttcctatgttaagatccatcctccta |
427 |
Q |
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| T |
34799145 |
aattacactactattgttgcttccact-agcatgtctgattttatgatccttaaatctttctttgttaagattcatcctccta |
34799226 |
T |
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