View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11059_low_3 (Length: 391)
Name: NF11059_low_3
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11059_low_3 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 96 - 381
Target Start/End: Original strand, 42157759 - 42158044
Alignment:
| Q |
96 |
tttattatatagttatgaattttatgttacaaaatgcaaaccggtgtatttgactatcatcccaatcatctctattattagtcctaccatagaacgttaa |
195 |
Q |
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| T |
42157759 |
tttatcatatagttatgaattttatgttacaaaatgcaaaccggtgtatttgactatcatcccaatcatctctattattagtcctaccatagaacgttaa |
42157858 |
T |
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| Q |
196 |
tacaatattccatagatagtcaaactctgtatctaaaaaacattaatttaaattttatccatctttactttcaaattgatatatatcttgtagcagcaga |
295 |
Q |
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| T |
42157859 |
tacaatattccatagatagtcaaactctgtatctaaaaaacattaatttaaattttatccatctttactttcaaattgatatatatcttgtagcagcaga |
42157958 |
T |
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| Q |
296 |
gttttgtttttgaacagaaccgttagaatttaggacatgttgtagatttggttattcagctagaagttttggtaatctgtgctcct |
381 |
Q |
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| T |
42157959 |
gtttcgtttttgaacagaaccgttagaatttaggacatgttgtagatttggttattcagctagaagttttggtaatctgtgctcct |
42158044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 4251318 - 4251232
Alignment:
| Q |
17 |
aaaaacaaggaaatcaccgcttttgagcttttcttgtgtgatattcgtgaaatttttgtcgcgatgttaagcattttcctttattat |
103 |
Q |
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| T |
4251318 |
aaaaacaaggaaatcaccgcttttgagcttttctcgtgtgatattcgtgaaacttttgttgcgatgttaagcattttccttttttat |
4251232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 10305536 - 10305613
Alignment:
| Q |
18 |
aaaacaaggaaatcaccgcttttgagcttttcttgtgtgatattcgtgaaatttttgtcgcgatgttaagcattttcc |
95 |
Q |
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| T |
10305536 |
aaaacaaggaaatcaccgcttttgagcttttctcgtgtgatattcgtgaaacttttgtcgcgatgttaagcattttcc |
10305613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 51005357 - 51005434
Alignment:
| Q |
18 |
aaaacaaggaaatcaccgcttttgagcttttcttgtgtgatattcgtgaaatttttgtcgcgatgttaagcattttcc |
95 |
Q |
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| T |
51005357 |
aaaacaaggaaatcaccgcttttgagcttttctcgtgtgatattcgtgaaacttttgtcgcgatgttaagcattttcc |
51005434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 4246150 - 4246071
Alignment:
| Q |
18 |
aaaacaaggaaatcaccgcttttgagcttttcttgtgtgatattcgtgaaatttttgtcgcgatgttaagcattttcctt |
97 |
Q |
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| T |
4246150 |
aaaacaaagaaatcaccgcttttgagcttttctcatgtgatattcgtgaaacttttgtcgcgatgttaagcattttcctt |
4246071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 143139 - 143220
Alignment:
| Q |
18 |
aaaacaaggaaatcaccgcttttgagcttttcttgtgtgatattcgtgaaatttttgtcgcgatgttaagcattttccttta |
99 |
Q |
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| T |
143139 |
aaaacaaggaaatcaccgcttttgaacttttctcatatgatattcgtgaaacttttgtcgcgatgttaagcattttccttta |
143220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 1814101 - 1814022
Alignment:
| Q |
18 |
aaaacaaggaaatcaccgcttttgagcttttcttgtgtgatattcgtgaaatttttgtcgcgatgttaagcattttcctt |
97 |
Q |
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| T |
1814101 |
aaaacaaggaaatcaccgtttttaaacttttctcgtgtgatattcgtgaaacttttgtcgcgatgttaagcattttcctt |
1814022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 13761608 - 13761685
Alignment:
| Q |
18 |
aaaacaaggaaatcaccgcttttgagcttttcttgtgtgatattcgtgaaatttttgtcgcgatgttaagcattttcc |
95 |
Q |
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| T |
13761608 |
aaaacaaggaaatcaccacttttgagcttttctcgtgtgatatttgtgaaacttttgtcgtgatgttaagcattttcc |
13761685 |
T |
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