View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11059_low_4 (Length: 383)
Name: NF11059_low_4
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11059_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 50275560 - 50275919
Alignment:
| Q |
20 |
gcctcgaggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaatta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275560 |
gcctcgaggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaatta |
50275659 |
T |
|
| Q |
120 |
ctagtggtagtttgtttttagcctctataa----agtcttgatgtaaccgcttattcattctaaatatcatttctattttactatctaaacttttctctt |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275660 |
ctagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatctaaacttttctctt |
50275759 |
T |
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| Q |
216 |
atccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275760 |
atccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttc |
50275859 |
T |
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| Q |
316 |
tgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgct |
375 |
Q |
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| T |
50275860 |
tgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgct |
50275919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 50279584 - 50279943
Alignment:
| Q |
20 |
gcctcgaggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaatta |
119 |
Q |
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| T |
50279584 |
gcctcgaggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaatta |
50279683 |
T |
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| Q |
120 |
ctagtggtagtttgtttttagcctctataa----agtcttgatgtaaccgcttattcattctaaatatcatttctattttactatctaaacttttctctt |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279684 |
ctagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatctaaacttttctctt |
50279783 |
T |
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| Q |
216 |
atccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttc |
315 |
Q |
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| T |
50279784 |
atccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttc |
50279883 |
T |
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| Q |
316 |
tgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgct |
375 |
Q |
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| T |
50279884 |
tgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgct |
50279943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 271 - 375
Target Start/End: Complemental strand, 14462668 - 14462564
Alignment:
| Q |
271 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462668 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
14462569 |
T |
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| Q |
371 |
atgct |
375 |
Q |
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||||| |
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| T |
14462568 |
atgct |
14462564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 375
Target Start/End: Complemental strand, 22610283 - 22610169
Alignment:
| Q |
261 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagc |
360 |
Q |
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|||||||||||| ||| |||||||| ||| ||||| |||| || ||| |||||||| | |||||||||||||||||| | || |||||||||||||||| |
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| T |
22610283 |
tcaccttgagaatttcagatgaacgaaatgcaccatgccaaataaaaaatctttctactggtgtcttccacaacccatagagcatgtgaaatacatcagt |
22610184 |
T |
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| Q |
361 |
ctttgcacctatgct |
375 |
Q |
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|||||| |||||||| |
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| T |
22610183 |
ctttgcccctatgct |
22610169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 14931491 - 14931420
Alignment:
| Q |
261 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccaca |
332 |
Q |
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|||||||||||||||| || || || || ||||||||||| | |||||| ||||| |||||||| ||||||| |
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| T |
14931491 |
tcaccttgagaagttcagacgaccgaaaaccaccaagccataagaaacacctttcagcaggtgttttccaca |
14931420 |
T |
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