View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11059_low_5 (Length: 358)
Name: NF11059_low_5
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11059_low_5 |
 | |
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| [»] scaffold0794 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 11445471 - 11445126
Alignment:
| Q |
1 |
gtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
11445471 |
gtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtggcactcctctaagaaatggctcactgaggacaaggaactcagcctatttgag |
11445372 |
T |
|
| Q |
101 |
agcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11445371 |
agcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatct |
11445272 |
T |
|
| Q |
201 |
tcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11445271 |
tcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatga |
11445172 |
T |
|
| Q |
301 |
agcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445171 |
agcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11445126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 11547619 - 11547964
Alignment:
| Q |
1 |
gtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
11547619 |
gtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtggcactcctctaagaaatggctcactgaggacaaggaactcagcctatttgag |
11547718 |
T |
|
| Q |
101 |
agcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547719 |
agcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatct |
11547818 |
T |
|
| Q |
201 |
tcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11547819 |
tcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatga |
11547918 |
T |
|
| Q |
301 |
agcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547919 |
agcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11547964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 11507388 - 11507733
Alignment:
| Q |
1 |
gtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgag |
100 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||| || ||||||||| |
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|
| T |
11507388 |
gtcaccatttgttaccggaacggttcatccatgtcgtctgaacatatggtactcctctacgaaatggctcactgaggagaaggaactcagtctctttgag |
11507487 |
T |
|
| Q |
101 |
agcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11507488 |
agcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatct |
11507587 |
T |
|
| Q |
201 |
tcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507588 |
tcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttgaagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatga |
11507687 |
T |
|
| Q |
301 |
agcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507688 |
agcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11507733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 346
Target Start/End: Complemental strand, 11468439 - 11468116
Alignment:
| Q |
23 |
cttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacatttt |
122 |
Q |
| |
|
|||||||||||| |||| | |||||||||||||||||||||||| || | ||||| ||||| ||| || | ||| || |||| || |||||||||| |
|
|
| T |
11468439 |
cttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacatttt |
11468340 |
T |
|
| Q |
123 |
gggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtg |
222 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |||| || ||||||||| ||| ||||| |||||||| ||||| || || |||||||| || || || |
|
|
| T |
11468339 |
ttaactttcttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactg |
11468240 |
T |
|
| Q |
223 |
caatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgc |
322 |
Q |
| |
|
|| ||||||||||| |||||||| ||| | |||||||| | |||||| | |||| | | |||||||||| ||||||| ||||| || |||||||| |
|
|
| T |
11468239 |
cagccatgtgtttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgc |
11468140 |
T |
|
| Q |
323 |
acagtatttgatcaaccacaggtt |
346 |
Q |
| |
|
||||| || ||||||||||||||| |
|
|
| T |
11468139 |
acagttttagatcaaccacaggtt |
11468116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 346
Target Start/End: Original strand, 11523022 - 11523345
Alignment:
| Q |
23 |
cttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacatttt |
122 |
Q |
| |
|
|||||||||||| |||| | |||||||||||||||||||||||| || | ||||| ||||| ||| || | ||| || |||| || |||||||||| |
|
|
| T |
11523022 |
cttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacatttt |
11523121 |
T |
|
| Q |
123 |
gggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtg |
222 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |||| || ||||||||| ||| ||||| |||||||| ||||| || || |||||||| || || || |
|
|
| T |
11523122 |
ttaactttcttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactg |
11523221 |
T |
|
| Q |
223 |
caatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgc |
322 |
Q |
| |
|
|| ||||||||||| |||||||| ||| | |||||||| | |||||| | |||| | | |||||||||| ||||||| ||||| || |||||||| |
|
|
| T |
11523222 |
cagccatgtgtttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgc |
11523321 |
T |
|
| Q |
323 |
acagtatttgatcaaccacaggtt |
346 |
Q |
| |
|
||||| || ||||||||||||||| |
|
|
| T |
11523322 |
acagttttagatcaaccacaggtt |
11523345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 346
Target Start/End: Original strand, 34784235 - 34784539
Alignment:
| Q |
42 |
acatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaaga |
141 |
Q |
| |
|
|||||||| | || || ||||||||| ||| |||||| ||||||| | || |||||| | |||| |||||||| | |||||| | |||||||||||| |
|
|
| T |
34784235 |
acatgtggaagtcttcaaagaaatggttcaatgaggataaggaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaaga |
34784334 |
T |
|
| Q |
142 |
tactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggt |
241 |
Q |
| |
|
| ||||||||| | ||||| |||||||||| |||||||||||||||||| ||| || || |||||||| | ||| ||| |||||||||| ||| |
|
|
| T |
34784335 |
ttctgaatctggtactttgagtttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggt |
34784434 |
T |
|
| Q |
242 |
ttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccac |
341 |
Q |
| |
|
||||| ||| | |||||||| | ||||||| || | | ||||||| || || |||||||| |||||| | |||||||||| || ||||||||||||| |
|
|
| T |
34784435 |
ttggaatctcttgttgatgtcgcgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgtttttgatcaaccac |
34784534 |
T |
|
| Q |
342 |
aggtt |
346 |
Q |
| |
|
||||| |
|
|
| T |
34784535 |
aggtt |
34784539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 34776100 - 34776327
Alignment:
| Q |
119 |
ttttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaag |
218 |
Q |
| |
|
|||||||| | ||||||||||||| |||||||| | |||||||||||||||| |||||||| |||||||| ||| || || |||| ||| ||| |
|
|
| T |
34776100 |
ttttgggattttcttaacaaagattctgaatctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaag |
34776199 |
T |
|
| Q |
219 |
agtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaa |
318 |
Q |
| |
|
|| || | || || || |||||||||||| | ||||||||||||||||| | || ||| | ||||||||||| |||||| ||||||| |||| || |
|
|
| T |
34776200 |
agaataaacgcgttttcgagggtttggagtctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaa |
34776299 |
T |
|
| Q |
319 |
atgcacagtatttgatcaaccacaggtt |
346 |
Q |
| |
|
||| || || |||||||||||||||||| |
|
|
| T |
34776300 |
atgtactgtttttgatcaaccacaggtt |
34776327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 2045 - 2390
Alignment:
| Q |
1 |
gtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgag |
100 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
2045 |
gtcaccatttgttaccggaacggttcatccatgtcgtctgaacatatggtactcctctacgaaatggctcactgaggagaaggaactcagtctctttgag |
2144 |
T |
|
| Q |
101 |
agcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2145 |
agcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatct |
2244 |
T |
|
| Q |
201 |
tcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2245 |
tcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggggtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatga |
2344 |
T |
|
| Q |
301 |
agcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2345 |
agcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
2390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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