View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11059_low_8 (Length: 315)
Name: NF11059_low_8
Description: NF11059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11059_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 13225472 - 13225175
Alignment:
| Q |
1 |
tttggaagcattgtaagtgtttgtggaattgacccattgagattgttgttttggatacgaactcgaatgagtgaggtgcaatttgtgagtgatgatggaa |
100 |
Q |
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| T |
13225472 |
tttggaagcattgtaagtgtttgtggaattgacccattgagattgttgttttggatacgaactcgaatgagtgaggtgcaatttgtgagtgatgatggaa |
13225373 |
T |
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| Q |
101 |
ggttattggtgaatttgttgttgaagatattgaattttacaagattgtttcctttgcaaatgttgatagggattgaaccttggagcgagtttgtggaaac |
200 |
Q |
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| T |
13225372 |
ggttattggtgaatttgttgttgaagatattgaattttacaagattgtttcctttgcaaatgttgatagggattgaaccttggagcgagtttgtggaaac |
13225273 |
T |
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| Q |
201 |
atcgagtaattgtagtaacccattagaaccgagttttggtggtaatggaccggtgaatgagttgttgaaaatatggaaagtgttgagttttggaaggt |
298 |
Q |
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| T |
13225272 |
atcgagtaattgtagtaacccgttagaaccgagttttggtggtaatgcaccggtgaatgagttgttgaaaatatggaaagtgttgagttttggaaggt |
13225175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 13148301 - 13148592
Alignment:
| Q |
1 |
tttggaagcattgtaagtgtttgtggaattgacccattgagattgttgttttggatacgaactcgaatgagtgaggtgcaatttgtgagtgatgatggaa |
100 |
Q |
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| T |
13148301 |
tttggaaccagtgtaagggtttgtggaattgacccgttgagtttgttgttttggattcgaaccctagtgagtgaggtacagttgttgagtgacgatggaa |
13148400 |
T |
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| Q |
101 |
ggttattggtgaatttgttgttgaagatattgaattttacaagattgtttcctttgcaaatgttgatagggattgaaccttggagcgagtttgtggaaac |
200 |
Q |
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| T |
13148401 |
gactattggtgaaattgttgtcgaagagaatgaaccaaaccaaattgtttcctttgcaaatgttgatggggatcgaaccttgaagtgagtttgtggaaac |
13148500 |
T |
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| Q |
201 |
atcgagtaattgtagtaacccattagaaccgagttttggtggtaatggaccggtgaatgagttgttgaaaatatggaaagtgttgagttttg |
292 |
Q |
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| T |
13148501 |
atcaagtaattttagtaacccattggaaccgagttttggtggtagtgtacctctgagtgagttgttgaaaacttggaaagtgttaagttttg |
13148592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 296
Target Start/End: Original strand, 13314899 - 13315191
Alignment:
| Q |
4 |
ggaagcattgtaagtgtttgtggaattgacccattgagattgttgttttggatacgaactcgaatgagtgaggtgcaatttgtgagtgatgatggaaggt |
103 |
Q |
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| T |
13314899 |
ggaagcatggtaagggtttgtggaattggcccgttgagtttgttgttttggattcgagccctagtgagtgaagtacagttgttgagtgacgatggaagag |
13314998 |
T |
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| Q |
104 |
tattggtgaatttgttgttgaagatattgaattttacaagattgtttcctttgcaaatgttgatagggattgaaccttggagcgagtttgtggaaacatc |
203 |
Q |
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| T |
13314999 |
tattggtaaagttgttgtcgaagagaatcaacttaaccaaattgtttcctttgcaaatattgatggggattgagccttggattaggtttgtggaaacatc |
13315098 |
T |
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| Q |
204 |
gagtaattgtagtaacccattagaaccgagttttggtggtaatggaccggtgaatgagttgttgaaaatatggaaagtgttgagttttggaag |
296 |
Q |
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| T |
13315099 |
tattctttgtagcaacccgttggaaccgagtttcgggggtagtctaccaatgagtgaattgttgaaaacttggaaagtgttgagttttggaag |
13315191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 47733125 - 47733015
Alignment:
| Q |
45 |
gttgttttggatacgaactcgaatgagtgaggtgcaatttgtgagtgatgatggaaggttattggtgaatttgttgttgaagatattgaattttacaaga |
144 |
Q |
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| T |
47733125 |
gttgttttggatacgaaccctaacgagtgaggtgcaattggtaagcgacgatgaaagcttattggtgaatttgtttttgaagagattgaacctaacaaga |
47733026 |
T |
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| Q |
145 |
ttgtttccttt |
155 |
Q |
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| T |
47733025 |
ttatttacttt |
47733015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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