View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11060_low_1 (Length: 436)
Name: NF11060_low_1
Description: NF11060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11060_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 5655571 - 5655996
Alignment:
| Q |
1 |
caaacactttgaaccattctcgatggcta-gaaccctcattcaatttttctatgggatttaaaccctacgaaccctcattctcgatagtttgtgttcgat |
99 |
Q |
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| T |
5655571 |
caaacactttgaaccattctcgatggctatgaatcctcattcaatttttctttgggatttaaaccctacgaaccctcattctcgatagtttgtgttcgat |
5655670 |
T |
|
| Q |
100 |
aatttgcagatagattgttgtgtgtgtagaagtgattggggtttttgtgttaagcttcgattttttcattgtgacttttggttcgaaggc-ttaaggtac |
198 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |||| |
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| T |
5655671 |
aatttgcagataaattgttttgtgtgtagaagtgattggggttttcatgttaagcttcgattttttcattgtgccttttggttcgaaggctttaatgtac |
5655770 |
T |
|
| Q |
199 |
gaattggtgatttcagaaatttactaccctcaatttccttctatgtaaaaacactttatgtttactccttgatatatttgctactgttttgtgcattatt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5655771 |
gaattggtgatttcagaaatttactaccctcaatttccttctatgtaaaaacactttatgtttactccttgatatatttgctactgttttgtgcattatt |
5655870 |
T |
|
| Q |
299 |
gtaattaaccaaaacaacaaaattgtttcgaaatttacattacaatccaaaccttttaaaatttgttctcgtgcattggcta--gcccttttggtttata |
396 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
5655871 |
gtaattaaccaaaa-aacaaaattgtttcgaaatttacattacaatccaaaccttttaaaatttgttcttctgcattggctagtgcccttttggtttata |
5655969 |
T |
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| Q |
397 |
atgatcatgaggctccatgtggcaatt |
423 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5655970 |
atgatcatgaggctccatgtggcaatt |
5655996 |
T |
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