View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11060_low_3 (Length: 396)
Name: NF11060_low_3
Description: NF11060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11060_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 29007362 - 29007740
Alignment:
| Q |
1 |
tttagcatgtgcatctggaggactaggaggagaatcactgtgtggtggactaggaggagaatcaccattcggtggactaggaggagaatgagggcgtggt |
100 |
Q |
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| T |
29007362 |
tttagcatgtgcatctggaggactaggaggagaatcactgtgtggtggactaggaggagaatcaccattcggtggactaggaggagaatgagggcgtggt |
29007461 |
T |
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| Q |
101 |
ggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggccttgttgacaatgacccattctgccacaaa |
200 |
Q |
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| T |
29007462 |
gcagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggccttgttgacaatgacccattctgccacaaa |
29007561 |
T |
|
| Q |
201 |
cgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007562 |
cgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttg |
29007661 |
T |
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| Q |
301 |
gtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttatt |
379 |
Q |
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| T |
29007662 |
gtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttatt |
29007740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 71 - 368
Target Start/End: Complemental strand, 21409776 - 21409490
Alignment:
| Q |
71 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
170 |
Q |
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| T |
21409776 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggagg-----------tgttgttggactgagcttgaactttgactttgagtttcaggc |
21409688 |
T |
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| Q |
171 |
cttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatt |
270 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| | ||||| ||| ||||||||||| |
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| T |
21409687 |
cttgttggcaatggcccattctgccacaaacgaagtagcgttttcctgattcaatgacgtggatcactgtttctcctgagttgtatgtcgaaatggcatt |
21409588 |
T |
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| Q |
271 |
tgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaac |
368 |
Q |
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| T |
21409587 |
tgctattgtacatgtgttgtacccttgttggtttacctcaattacgtcgtacaacggtgtgtaagtaaacactgtcaatcatcacatatccaatgaac |
21409490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 21465563 - 21465429
Alignment:
| Q |
71 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
170 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
21465563 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggaggagaagttccagtgttgttggactgagcttgaactttgactttgagtttcaggc |
21465464 |
T |
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| Q |
171 |
cttgttgacaatgacccattctgccacaaacgaag |
205 |
Q |
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| T |
21465463 |
cttgttggcaatggcccattctgccacaaacgaag |
21465429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 221 - 368
Target Start/End: Complemental strand, 21461926 - 21461779
Alignment:
| Q |
221 |
tcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgt |
320 |
Q |
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|||||||||||||||||| ||||||||| ||||| ||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||| || |||| || |
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| T |
21461926 |
tcagtgaggtggatcactatttctccagagttgtatgtcgaaacggcgtttgctattgtacatgtgttgtacccttgttggtttacctcaattacgttgt |
21461827 |
T |
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| Q |
321 |
ataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaac |
368 |
Q |
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| T |
21461826 |
acaacggtgtgtaagtaaacgctgtcaatcatcacatatccaatgaac |
21461779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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