View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11060_low_5 (Length: 296)

Name: NF11060_low_5
Description: NF11060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11060_low_5
NF11060_low_5
[»] chr3 (4 HSPs)
chr3 (16-289)||(34456146-34456419)
chr3 (190-282)||(37043772-37043864)
chr3 (16-117)||(37043644-37043744)
chr3 (190-283)||(39021411-39021501)
[»] chr2 (2 HSPs)
chr2 (16-245)||(23984802-23985030)
chr2 (109-283)||(3013390-3013563)
[»] chr1 (3 HSPs)
chr1 (16-288)||(47789691-47789962)
chr1 (116-289)||(47784130-47784300)
chr1 (88-273)||(6236225-6236410)
[»] chr6 (1 HSPs)
chr6 (16-275)||(29412769-29413025)
[»] chr5 (2 HSPs)
chr5 (16-178)||(39006474-39006635)
chr5 (100-279)||(8586788-8586967)
[»] chr4 (2 HSPs)
chr4 (16-262)||(52248060-52248304)
chr4 (198-282)||(324343-324427)
[»] chr8 (1 HSPs)
chr8 (225-282)||(31942828-31942885)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 34456419 - 34456146
Alignment:
Q  16 caaaatatattaaaaaccaaaccaattaagcataagatgtgcctaacggaaaaactgtgtataacataaaaataacaaacacggtaaagacagaaaccac 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  34456419 caaaatatattaaaaaccaaaccaattaagcataagaagtgcctaacggaaaaactgtgtataacgtaaaaataacaaacacggtaaagactgaaaccac 34456320  T
Q  116 aattacaaaatggtgtaacatatacaaagagacggcatagaccaccaataatgaaaataaaaaatgaagtccgatttaggtgtctttaaccaccaccaag 215  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||    
T  34456319 aattataaaatggtgtaacatatacaaagagacggcatagaccaccaataataaaaataaaaaatgaagctcgatttaggtgtctttaaccaccaccaag 34456220  T
Q  216 aatgaagtttaatattatcgaaaagttgatccttaaaagacacgttgttgttgaaaattctcgagttcatctca 289  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||    
T  34456219 aatgaagtttaatattatcgaaaaattaatccttaaaagacacgttgttgttgaaaattctcgagttcttctca 34456146  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 37043772 - 37043864
Alignment:
Q  190 tttaggtgtctttaaccaccaccaagaatgaagtttaatattatcgaaaagttgatccttaaaagacacgttgttgttgaaaattctcgagtt 282  Q
    |||| ||||||||| ||||||| || |||||| ||||||||| |||| ||||||||||||| ||||||||||||| |||||| ||||||||||    
T  37043772 tttatgtgtctttagccaccacaaaaaatgaaatttaatattgtcgagaagttgatccttagaagacacgttgttattgaaatttctcgagtt 37043864  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 37043644 - 37043744
Alignment:
Q  16 caaaatatattaaaaaccaaaccaattaagcataagatgtgcctaacggaaaaactgtgtataacataaaaataacaaacacggtaaagacagaaaccac 115  Q
    |||||||||||||||||||||  | ||||||| |||||||||| |||| |||||||||||||||| | ||| |||||||| || |||||| |||||||||    
T  37043644 caaaatatattaaaaaccaaattagttaagcacaagatgtgccaaacg-aaaaactgtgtataacgtcaaagtaacaaactcgataaagaaagaaaccac 37043742  T
Q  116 aa 117  Q
    ||    
T  37043743 aa 37043744  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 39021501 - 39021411
Alignment:
Q  190 tttaggtgtctttaaccaccaccaagaatgaagtttaatattatcgaaaagttgatccttaaaagacacgttgttgttgaaaattctcgagttc 283  Q
    |||| ||||||||| |||||| || |||| ||  | |||| |||||| |||||| |||||||||||||   ||||| |||||||||||||||||    
T  39021501 tttatgtgtctttagccaccatcaggaataaaactcaatactatcgagaagttggtccttaaaagaca---tgttgctgaaaattctcgagttc 39021411  T

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Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 23984802 - 23985030
Alignment:
Q  16 caaaatatattaaaaaccaaaccaattaagcataagatgtgcctaacggaaaaactgtgtataacataaaaataacaaacacggtaaagacagaaaccac 115  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||| |||||| ||||||| ||| | ||| |||||||||||| |||||||||||||||    
T  23984802 caaaatatattaaaaatcaaaccagttaagcacaagatgtgcctaatggaaaa-ctgtgtacaacgtcaaagtaacaaacacgggaaagacagaaaccac 23984900  T
Q  116 aattacaaaatggtgtaacatatacaaagagacggcatagaccaccaataatgaaaataaaaaatgaagtccgatttaggtgtctttaaccaccaccaag 215  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||   ||  ||||||||  |||||||| ||||||||||     
T  23984901 aattacaaaatggtgtaacttatacaaagagacggcatagaccatcaataatgaaaatcaaaagcaaaacccgatttatttgtctttagccaccaccaaa 23985000  T
Q  216 aatgaagtttaatattatcgaaaagttgat 245  Q
    |||||||||||||| |||||| ||||||||    
T  23985001 aatgaagtttaatactatcgagaagttgat 23985030  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 109 - 283
Target Start/End: Complemental strand, 3013563 - 3013390
Alignment:
Q  109 aaaccacaattacaaaatggtgtaacatatacaaagagacggcatagaccaccaataatgaaaataaaaaatgaagtccgatttaggtgtctttaaccac 208  Q
    |||||||||||||||| ||||||||| ||||| |||||||| |||| |||||||||||| ||||| ||||  |||  | ||| || | ||||||| ||||    
T  3013563 aaaccacaattacaaactggtgtaacctataccaagagacgacataaaccaccaataat-aaaatcaaaagagaaacctgatatatgcgtctttagccac 3013465  T
Q  209 caccaagaatgaagtttaatattatcgaaaagttgatccttaaaagacacgttgttgttgaaaattctcgagttc 283  Q
    |||||||||||||| |||||| |||||| ||||||||||||| |||||||||||| | |||||||| ||||||||    
T  3013464 caccaagaatgaagcttaatactatcgagaagttgatccttagaagacacgttgtcgctgaaaattttcgagttc 3013390  T

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Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 47789962 - 47789691
Alignment:
Q  16 caaaatatattaaaaaccaaaccaattaagcataagatgtgcctaacggaaaaactgtgtataacataaaaataacaaacacggtaaagacagaaaccac 115  Q
    |||||||||||||||||||||| | ||||||| |||||| |||||||||| || ||||||| ||| | |||  |||||||||| ||||||||||||||||    
T  47789962 caaaatatattaaaaaccaaacgagttaagcacaagatgcgcctaacggataa-ctgtgtacaacgtcaaagcaacaaacacgctaaagacagaaaccac 47789864  T
Q  116 aattacaaaatggtgtaacatatacaaagagacggcatagaccaccaataatgaaaataaaaaatgaagtccgatttaggtgtctttaaccaccaccaag 215  Q
    |||||||||||| |||||  | |||||||||||| ||||||||||||||||| | ||| ||||  |||  ||  |||| |  |||||| |||||| ||||    
T  47789863 aattacaaaatgatgtaatctttacaaagagacgccatagaccaccaataataataatcaaaagcgaaacccagtttatgcatctttagccaccatcaag 47789764  T
Q  216 aatgaagtttaatattatcgaaaagttgatccttaaaagacacgttgttgttgaaaattctcgagttcatctc 288  Q
    ||||||  |||||| || ||| ||||||||||||| |||||| ||||| ||||||||||||||||||| ||||    
T  47789763 aatgaaacttaatactagcgagaagttgatccttagaagacatgttgtcgttgaaaattctcgagttcctctc 47789691  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 116 - 289
Target Start/End: Complemental strand, 47784300 - 47784130
Alignment:
Q  116 aattacaaaatggtgtaacatatacaaagagacggcatagaccaccaataatgaaaataaaaaatgaagtccgatttaggtgtctttaaccaccaccaag 215  Q
    |||||||||||||| |||||||||||||||||||||||| |||  |||||||||||||||||||  || |||  |||| ||||||||| |||||||||||    
T  47784300 aattacaaaatggtttaacatatacaaagagacggcatataccgtcaataatgaaaataaaaaacaaaatccagtttatgtgtctttagccaccaccaag 47784201  T
Q  216 aatgaagtttaatattatcgaaaagttgatccttaaaagacacgttgttgttgaaaattctcgagttcatctca 289  Q
    ||||||| |||||| |||||| ||||||||| ||| ||||   | |||||||||||||||| ||||| ||||||    
T  47784200 aatgaagcttaatactatcgacaagttgatctttagaaga---gatgttgttgaaaattctagagtttatctca 47784130  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 88 - 273
Target Start/End: Complemental strand, 6236410 - 6236225
Alignment:
Q  88 taacaaacacggtaaagacagaaaccacaattacaaaatggtgtaacatatacaaagagacggcatagaccaccaataatgaaaataaaaaatgaagtcc 187  Q
    |||||||||||  ||||||| |||||||||||||||| ||||||| |||||| ||||||| | ||| ||||||||||||| ||||| ||||  ||| ||     
T  6236410 taacaaacacgacaaagacataaaccacaattacaaattggtgtagcatatagaaagagatgacattgaccaccaataataaaaatcaaaagagaaatct 6236311  T
Q  188 gatttaggtgtctttaaccaccaccaagaatgaagtttaatattatcgaaaagttgatccttaaaagacacgttgttgttgaaaat 273  Q
    |||||| | ||||||| |||| ||||||||||||| |||| | |||| | ||||||| | | |  ||||| ||||||| |||||||    
T  6236310 gatttatgcgtctttagccacaaccaagaatgaagcttaagactatcaagaagttgaccatgaggagacaagttgttgatgaaaat 6236225  T

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Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 29412769 - 29413025
Alignment:
Q  16 caaaatatattaaaaaccaaaccaattaagcataagatgtgcctaacggaaaaactgtgtataacataaaaataacaaacacggtaaagacagaaaccac 115  Q
    ||||||||||||||||| ||| || |||| || || |||||  ||| ||   ||||||||| ||| | ||| ||||||| |||||||| ||| |||||||    
T  29412769 caaaatatattaaaaactaaatcagttaaacacaaaatgtgtgtaatgg--gaactgtgtacaacgtcaaagtaacaaagacggtaaaaacaaaaaccac 29412866  T
Q  116 aattacaaaatggtgtaacatatacaaagagacggcatagaccaccaataatgaaaataaaaaatgaagtccgatttaggtgtctttaaccaccaccaag 215  Q
    |||||  |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||  |||  ||| || | ||||| ||| |||||||||||    
T  29412867 aattatcaaatggtgtaacttatacaaagagacgacatagaccaccaataatgaaaatcaaaagcgaaacccggttaatgtgtcattagccaccaccaag 29412966  T
Q  216 aatgaagtttaatattatcgaaaagttgatccttaaaagacacgttgttgttgaaaattc 275  Q
    ||| |||  ||||| |||||| || || ||||||| ||||||||||||||||||||||||    
T  29412967 aat-aagcataatactatcgagaaatttatccttagaagacacgttgttgttgaaaattc 29413025  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 39006635 - 39006474
Alignment:
Q  16 caaaatatattaaaaaccaaaccaattaagcataagatgtgcctaacggaaaaactgtgtataacataaaaataacaaacacggtaaagacagaaaccac 115  Q
    ||||||||||||||||| |||| || ||||||||||||||| |||| ||||||  ||| || ||| | ||| || |||| ||||||| ||||||||| ||    
T  39006635 caaaatatattaaaaacaaaactaactaagcataagatgtgtctaatggaaaat-tgtatacaacgtcaaagtagcaaatacggtaaggacagaaactac 39006537  T
Q  116 aattacaaaatggtgtaacatatacaaagagacggcatagaccaccaataatgaaaataaaaa 178  Q
    ||||||||| ||||||||| |||||||||||||| |||| |||||||||||| ||||||||||    
T  39006536 aattacaaactggtgtaacctatacaaagagacgacatataccaccaataataaaaataaaaa 39006474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 279
Target Start/End: Original strand, 8586788 - 8586967
Alignment:
Q  100 taaagacagaaaccacaattacaaaatggtgtaacatatacaaagagacggcatagaccaccaataatgaaaataaaaaatgaagtccgatttaggtgtc 199  Q
    |||| ||| ||||||| |||| ||| ||||||||| |||||||||| ||| ||||||| ||||| ||||||||  ||||  |||    | |||| | ||     
T  8586788 taaaaacaaaaaccactattataaagtggtgtaacttatacaaagaaacgacatagacaaccaaaaatgaaaagcaaaagagaaacatggtttatgggtg 8586887  T
Q  200 tttaaccaccaccaagaatgaagtttaatattatcgaaaagttgatccttaaaagacacgttgttgttgaaaattctcga 279  Q
    || ||||| ||||| || || || |||||| |||||| ||||||||| | | ||||||| |||||| |||||||||||||    
T  8586888 ttcaaccatcaccacgagtggagcttaatactatcgagaagttgatcttgagaagacactttgttgctgaaaattctcga 8586967  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 52248304 - 52248060
Alignment:
Q  16 caaaatatattaaaaaccaaaccaattaagcataagatgtgcctaacggaaaaactgtgtataacataaaaataacaaacacggtaaagacagaaaccac 115  Q
    ||||||||| ||| |||||||||| ||||||| || |||||||||| || |||  |||  | || || | | ||||||||| || ||  |||||||| ||    
T  52248304 caaaatataataacaaccaaaccagttaagcacaaaatgtgcctaatgggaaat-tgtacaaaaaatcatagtaacaaacatggcaat-acagaaactac 52248207  T
Q  116 aattacaaaatggtgtaacatatacaaagagacggcatagaccaccaataatgaaaataaaaaatgaagtccgatttaggtgtctttaaccaccaccaag 215  Q
    ||||||||| ||||||||| |||| ||||||||| | |||||||  |||||||||||| || |  ||| |||| |||| | ||||||| |||||| ||||    
T  52248206 aattacaaactggtgtaacctatataaagagacgacgtagaccattaataatgaaaatcaatagagaaatccggtttatgcgtctttagccaccatcaag 52248107  T
Q  216 aatgaagtttaatattatcgaaaagttgatccttaaaagacacgttg 262  Q
    ||||||  |||| | ||| || ||||||||||| | |||| ||||||    
T  52248106 aatgaaacttaaaactatggagaagttgatcctgagaagatacgttg 52248060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 324427 - 324343
Alignment:
Q  198 tctttaaccaccaccaagaatgaagtttaatattatcgaaaagttgatccttaaaagacacgttgttgttgaaaattctcgagtt 282  Q
    |||||| || |||| |||||||||| |||||   ||| | |||||||| ||| |||||||||||||| |||||||||| ||||||    
T  324427 tctttagccgccactaagaatgaagcttaatgccatcaagaagttgattctttaaagacacgttgttcttgaaaattcccgagtt 324343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 31942885 - 31942828
Alignment:
Q  225 taatattatcgaaaagttgatccttaaaagacacgttgttgttgaaaattctcgagtt 282  Q
    ||||| |||||| |||||||| |||| |||| || |||||| ||||||||||||||||    
T  31942885 taatactatcgagaagttgattcttagaagatacattgttgctgaaaattctcgagtt 31942828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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