View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11060_low_6 (Length: 263)
Name: NF11060_low_6
Description: NF11060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11060_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 31160934 - 31161163
Alignment:
| Q |
24 |
cctcctcagccctcttgccggaattattcaaaatgatggctagattcccgnnnnnnnctgcaaccaaatcactaaacaaggtcagagcatgcttcaagga |
123 |
Q |
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| T |
31160934 |
cctcctcagccctcttgccggaattattcaaaatgatggctagattccggaaaaaaactgcaaccaaatcactaaacaaggtcagagcatgcttcaagga |
31161033 |
T |
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| Q |
124 |
taaaagagcccaaaatacaacttaaacttgaaagaaccattgaacctccaaagatggcagaagcaaagtgaaaccatataagaatggacaacccagaaga |
223 |
Q |
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| T |
31161034 |
taaaagagcccaaaatacaactcaaacttgaaagaaccattgaacctccaaagatggcagaagcaaggtgaaaccatataagaatggacaacccagaaga |
31161133 |
T |
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| Q |
224 |
aaccaagccaccaaggtagaggtactccct |
253 |
Q |
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| T |
31161134 |
aaccaagccaccaaggtagaggtactccct |
31161163 |
T |
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Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 4214124 - 4214031
Alignment:
| Q |
160 |
ccattgaacctccaaagatggcagaagcaaagtgaaaccatataagaatggacaacccagaagaaaccaagccaccaaggtagaggtactccct |
253 |
Q |
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| T |
4214124 |
ccattgaacctccaaagatggcagaagcaaagtgcaaccacataagaatggacaacccagaagaaacaaagccaccaaggtagaggtactccct |
4214031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 4214374 - 4214336
Alignment:
| Q |
81 |
ctgcaaccaaatcactaaacaaggtcagagcatgcttca |
119 |
Q |
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| T |
4214374 |
ctgcaaccaaatcagtaaacaaggtcagagcatgcttca |
4214336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 41277950 - 41278020
Alignment:
| Q |
183 |
gaagcaaagtgaaaccatataagaatggacaacccagaagaaaccaagccaccaaggtagaggtactccct |
253 |
Q |
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|||||||| || ||||| |||||||| |||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
41277950 |
gaagcaaaatgcaaccacataagaatagacaacccagaagaaagcaagccaccaaggtagagatactccct |
41278020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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