View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11060_low_8 (Length: 240)

Name: NF11060_low_8
Description: NF11060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11060_low_8
NF11060_low_8
[»] chr1 (2 HSPs)
chr1 (17-240)||(7580978-7581201)
chr1 (19-234)||(7100047-7100262)
[»] chr4 (3 HSPs)
chr4 (17-236)||(13617219-13617438)
chr4 (63-152)||(20295929-20296018)
chr4 (64-164)||(52352630-52352730)
[»] chr5 (16 HSPs)
chr5 (23-236)||(17983528-17983741)
chr5 (19-164)||(29853937-29854082)
chr5 (19-152)||(30400700-30400833)
chr5 (63-236)||(30520888-30521061)
chr5 (63-236)||(30561228-30561401)
chr5 (64-152)||(30337872-30337960)
chr5 (64-152)||(30436484-30436572)
chr5 (64-236)||(30476046-30476218)
chr5 (64-152)||(30676635-30676723)
chr5 (93-167)||(30061072-30061146)
chr5 (19-228)||(30207148-30207357)
chr5 (64-152)||(30484072-30484160)
chr5 (19-170)||(29872800-29872951)
chr5 (93-167)||(30241713-30241787)
chr5 (93-167)||(30750346-30750420)
chr5 (64-236)||(17417856-17418028)
[»] chr7 (1 HSPs)
chr7 (19-152)||(26707958-26708091)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 7581201 - 7580978
Alignment:
Q  17 ataaccaacattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacgga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7581201 ataaccaacattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacgga 7581102  T
Q  117 agtacctttcgatccaccagacaacacagatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtcc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7581101 agtacctttcgatccaccagacaacacagatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacatcgtcc 7581002  T
Q  217 aaaaccagcaaacatctttttcct 240  Q
    ||||||||||||| ||||||||||    
T  7581001 aaaaccagcaaacgtctttttcct 7580978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 7100047 - 7100262
Alignment:
Q  19 aaccaacattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaag 118  Q
    ||||| || |||| |||||||||||| ||||||| ||| |||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||    
T  7100047 aaccagcactcatgatcagagagaaccgacaaaggacgggttgggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaag 7100146  T
Q  119 tacctttcgatccaccagacaacacagatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaa 218  Q
    ||||||| |||||||  |||||||| |||||||| |||||||||||||| |||| |||||| ||||||||||||| | ||||  |||| ||||  |||||    
T  7100147 tacctttggatccacatgacaacaccgatttcaacttattccatttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaa 7100246  T
Q  219 aaccagcaaacatctt 234  Q
    ||||| ||||||||||    
T  7100247 aaccaacaaacatctt 7100262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 13617219 - 13617438
Alignment:
Q  17 ataaccaacattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacgga 116  Q
    |||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||    
T  13617219 ataaccaacattcaccatcatagagaactgacaaacaatgagttgagcatgttcccatgattgatgcaacatcgatatcacgagtagacactaaaacaga 13617318  T
Q  117 agtacctttcgatccaccagacaacacagatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtcc 216  Q
    |||||||||| |||||| |||||||||  |||||||  |||||||||||| |||||||| ||  |||||||| |||||||||||  ||||||| | ||||    
T  13617319 agtacctttcaatccacaagacaacacgaatttcaacgtattccatttcttatggtctattctgaattcaaactcttgacttttgttccaaacgtcgtcc 13617418  T
Q  217 aaaaccagcaaacatctttt 236  Q
    ||||| |||||| |||||||    
T  13617419 aaaacaagcaaaaatctttt 13617438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 20296018 - 20295929
Alignment:
Q  63 gcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaa 152  Q
    ||||||||||||||||| |||||| ||| |||||||||| |||||||||| |||| ||||||| |||||||  ||||| |||||||||||    
T  20296018 gcatgttcccatgattgttgcaacatccttatcacgagttgacactaaaatggaactaccttttgatccacatgacaaaacagatttcaa 20295929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 52352630 - 52352730
Alignment:
Q  64 catgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaatttattccatt 163  Q
    ||||||||||||||||  ||||| ||| |||||| ||| || ||||||| | ||| |||||| |||||||  ||||||||||||||||| || |||||||    
T  52352630 catgttcccatgattgtcgcaacatccttatcacaagtggaaactaaaatgtaagcacctttggatccacaggacaacacagatttcaacttgttccatt 52352729  T
Q  164 t 164  Q
    |    
T  52352730 t 52352730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 17983528 - 17983741
Alignment:
Q  23 aacattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacc 122  Q
    |||||||||  |||||||||||||||| || ||||||||  ||||||||||| ||||| ||||| ||||| ||||||||||||||||||| |||||||||    
T  17983528 aacattcattgtcagagagaactgacagaggacgagttggacatgttcccataattgaggcaacatccatgtcacgagtagacactaaaatggaagtacc 17983627  T
Q  123 tttcgatccaccagacaacacagatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaacc 222  Q
    ||| ||||||| |||||||||||| |||||  ||||||| ||||  |||| || ||| ||||||||||||| ||||||  |||| |||| ||| ||||||    
T  17983628 tttggatccacaagacaacacagacttcaacctattccacttcttttggtttaatccgaattcaaattcttcacttttgttccacacatcgtcgaaaacc 17983727  T
Q  223 agcaaacatctttt 236  Q
    | ||| ||||||||    
T  17983728 aacaagcatctttt 17983741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 29853937 - 29854082
Alignment:
Q  19 aaccaacattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaag 118  Q
    ||||||||||||  |||||||||| |  |||||||  ||| |  ||||||||||||||||| ||||||     |||||||||| |||||||||| ||||     
T  29853937 aaccaacattcactatcagagagaccatacaaagagtgagcttggcatgttcccatgattgttgcaacaaatttatcacgagtggacactaaaatggaac 29854036  T
Q  119 tacctttcgatccaccagacaacacagatttcaatttattccattt 164  Q
    ||||||| |||||||  ||||||||||| ||||| | |||||||||    
T  29854037 taccttttgatccacacgacaacacagacttcaaatgattccattt 29854082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 30400700 - 30400833
Alignment:
Q  19 aaccaacattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaag 118  Q
    ||||||||||||  |||||||||| | ||||||||  ||| |  ||||||||||||||||| ||||||  |  ||||||| || |||||||||| ||||     
T  30400700 aaccaacattcactatcagagagaccagacaaagagtgagcttggcatgttcccatgattgttgcaacaactttatcacgggtggacactaaaatggaac 30400799  T
Q  119 tacctttcgatccaccagacaacacagatttcaa 152  Q
    ||||||| |||||||  ||||| |||||||||||    
T  30400800 taccttttgatccacacgacaaaacagatttcaa 30400833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 30521061 - 30520888
Alignment:
Q  63 gcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaatttattccat 162  Q
    |||||||||||||||    ||||| ||| |||||||||| || ||||||| ||| | |||||| ||||||   |||||||| |||||||| |||||||||    
T  30521061 gcatgttcccatgatctcagcaacatccttatcacgagtggagactaaaatggatgaacctttggatccagttgacaacacggatttcaacttattccat 30520962  T
Q  163 ttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttt 236  Q
    ||||| |||  || ||||||||| | ||||||| || |  |||| ||||  |||||||| |||||| |||||||    
T  30520961 ttctcttggcttaatccaaattccagttcttgatttctgttccacacatcatccaaaacaagcaaatatctttt 30520888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 30561401 - 30561228
Alignment:
Q  63 gcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaatttattccat 162  Q
    |||||||||||||||    ||||| ||| |||||||||| || ||||||| ||| | |||||| ||||||   |||||||| |||||||| |||||||||    
T  30561401 gcatgttcccatgatctcagcaacatccttatcacgagtggagactaaaatggatgaacctttggatccagttgacaacacggatttcaacttattccat 30561302  T
Q  163 ttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttt 236  Q
    ||||| |||  || ||||||||| | ||||||| || |  |||| ||||  |||||||| |||||| |||||||    
T  30561301 ttctcttggcttaatccaaattccagttcttgatttctgttccacacatcatccaaaacaagcaaatatctttt 30561228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 30337960 - 30337872
Alignment:
Q  64 catgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaa 152  Q
    ||||| ||||||||||||||||| |||  ||||||||| |||||||||| |||| ||||||| |||||||  ||||| |||||||||||    
T  30337960 catgtccccatgattgatgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaa 30337872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 30436484 - 30436572
Alignment:
Q  64 catgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaa 152  Q
    |||||||||||||||| |||||| |||  ||||||||| |||||||||| |||| ||||||| |||||||  ||||| |||||||||||    
T  30436484 catgttcccatgattgttgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaa 30436572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 236
Target Start/End: Original strand, 30476046 - 30476218
Alignment:
Q  64 catgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaatttattccatt 163  Q
    |||||||||||||||  |||||| ||| |||||||||| || ||||||| |||||  ||||| |||||||  |||||| |||||||||| || |||||||    
T  30476046 catgttcccatgatttctgcaacatccttatcacgagtggaaactaaaatggaagatcctttggatccacatgacaacgcagatttcaacttgttccatt 30476145  T
Q  164 tctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttt 236  Q
    | || |||  || ||| | ||| ||| ||||| || |  |||| ||||  ||||||||||||||| |||||||    
T  30476146 tgtcttggcttaatcctagttccaatccttgatttctgctccatacatcatccaaaaccagcaaaaatctttt 30476218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 30676723 - 30676635
Alignment:
Q  64 catgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaa 152  Q
    ||||| ||||||||||||||||| |||  ||||||||| |||||||||| |||| ||||||| |||||||  ||||| |||||||||||    
T  30676723 catgtccccatgattgatgcaacatcctcatcacgagtggacactaaaatggaactacctttagatccacacgacaaaacagatttcaa 30676635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 30061072 - 30061146
Alignment:
Q  93 atcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaatttattccatttctc 167  Q
    |||||| || |||||||||| |||| ||||||| ||||||| ||||||||||| ||||||||| |||||||||||    
T  30061072 atcacgggtggacactaaaatggaactacctttggatccacaagacaacacaggtttcaatttgttccatttctc 30061146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 30207148 - 30207357
Alignment:
Q  19 aaccaacattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaag 118  Q
    ||||||||||||| ||||||||||||  | |||| | |||    ||||||||||||||| |  |||||  ||  ||||||||| |||||||||| ||||     
T  30207148 aaccaacattcattatcagagagaacatataaaggatgagcgtggcatgttcccatgatcgtcgcaacaacctcatcacgagtggacactaaaatggaac 30207247  T
Q  119 tacctttcgatccaccagacaacacagatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaa 218  Q
    ||||||| |||||||  || ||||| ||||||| | ||||||||||||| |||  || ||| ||||| ||||  ||| ||||  |||| ||||  |||||    
T  30207248 tacctttggatccacacgataacactgatttcagtatattccatttctcttggcttaatccgaattccaattgctgatttttgttccacacatcatccaa 30207347  T
Q  219 aaccagcaaa 228  Q
    || |||||||    
T  30207348 aatcagcaaa 30207357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 30484072 - 30484160
Alignment:
Q  64 catgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaa 152  Q
    ||||| |||||||||| |||||| |||  ||||||||| |||||||||| |||| ||||||| |||||||  ||||| |||||||||||    
T  30484072 catgtccccatgattgttgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaa 30484160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 29872800 - 29872951
Alignment:
Q  19 aaccaacattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaag 118  Q
    ||||||||||||  |||||||| | | ||||||||  ||| |  ||||||||||| ||||| ||||||  |  ||||||| || |||||||||| ||||     
T  29872800 aaccaacattcactatcagagataccagacaaagagtgagcttggcatgttcccacgattgttgcaacaactttatcacgggtggacactaaaatggaac 29872899  T
Q  119 tacctttcgatccaccagacaacacagatttcaatttattccatttctcatg 170  Q
    ||||||| |||||||  ||||||||||| ||||| | |||||| || |||||    
T  29872900 taccttttgatccacacgacaacacagacttcaaatgattccacttatcatg 29872951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 30241787 - 30241713
Alignment:
Q  93 atcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaatttattccatttctc 167  Q
    ||||||||| || ||||||| |||| ||||||| |||||||  |||||||||||||||||| | |||||||||||    
T  30241787 atcacgagtggatactaaaatggaactacctttggatccacatgacaacacagatttcaatgtgttccatttctc 30241713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 30750346 - 30750420
Alignment:
Q  93 atcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaatttattccatttctc 167  Q
    |||||| || |||| ||||| |||| ||||||| ||||||| ||||||||||| ||||||||| |||||||||||    
T  30750346 atcacgggtggacaataaaatggaactacctttggatccacaagacaacacaggtttcaatttgttccatttctc 30750420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 17418028 - 17417856
Alignment:
Q  64 catgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccac-cagacaacacagatttcaatttattccat 162  Q
    ||||||||||||||||  |||||  ||  ||||||||| |||||||||| |||| ||||||| ||||||| || | ||||| ||||||||  ||||||||    
T  17418028 catgttcccatgattgccgcaacaacctcatcacgagtggacactaaaatggaactacctttggatccacacata-aacactgatttcaacgtattccat 17417930  T
Q  163 ttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttt 236  Q
    ||||| |||  || ||| ||| | |||| |||  ||||  |||| |||| |||||||||||| ||| |||||||    
T  17417929 ttctcttggcttaatccgaatgctaattgttgcattttgttccacacatcgtccaaaaccagaaaatatctttt 17417856  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 26707958 - 26708091
Alignment:
Q  19 aaccaacattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaag 118  Q
    |||||||| |||  |||||||||| | ||||||||  ||| |  ||||||||||||||||| |||||| ||| |||||||||| |||||||||| ||||     
T  26707958 aaccaacagtcactatcagagagaccagacaaagagtgagcttggcatgttcccatgattgttgcaacatccttatcacgagtggacactaaaatggaac 26708057  T
Q  119 tacctttcgatccaccagacaacacagatttcaa 152  Q
    ||||||| |||||||  ||||| |||||||||||    
T  26708058 taccttttgatccacaggacaaaacagatttcaa 26708091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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