View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11061_high_1 (Length: 758)
Name: NF11061_high_1
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11061_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 492 - 694
Target Start/End: Complemental strand, 2931269 - 2931067
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa |
591 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
2931269 |
ttctatggagagagaataaatgagtacaaagaggaattgaaaacaattggagttatgttcaattgtgaggaagcatgtgaatttattggaaaagaactaa |
2931170 |
T |
|
| Q |
592 |
tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt |
691 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||| |||| | ||| ||| | |||||||||||||| |
|
|
| T |
2931169 |
tgtctcgtgctgcttctttctcattaagtaggagtcatgttcttttgattcttaacttcgtccaatatatccggacaaaccttcttcctttggacaattt |
2931070 |
T |
|
| Q |
692 |
tgt |
694 |
Q |
| |
|
||| |
|
|
| T |
2931069 |
tgt |
2931067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 492 - 694
Target Start/End: Original strand, 3011498 - 3011700
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa |
591 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| || | |
|
|
| T |
3011498 |
ttctatggggatagaataaatgaatacaaagaggagttgaaaacaattggagtgatgttcaattgtgaggaagcatgtggattcattggaagagagctca |
3011597 |
T |
|
| Q |
592 |
tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt |
691 |
Q |
| |
|
|||| ||||| ||||| ||||| |||| || ||| |||||||||||||||||||||| |||||||||||| |||| |||| | |||||||||||||| |
|
|
| T |
3011598 |
tgtctcgtgcagcttcattctcactaagcaggagtgatgttcttttgatgcttaacttcatccaatatctcaagaaaagtcttcttcctttggacaattt |
3011697 |
T |
|
| Q |
692 |
tgt |
694 |
Q |
| |
|
||| |
|
|
| T |
3011698 |
tgt |
3011700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 492 - 695
Target Start/End: Complemental strand, 37796770 - 37796567
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa |
591 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||||| |||||| | |
|
|
| T |
37796770 |
ttctatggggatagaataaacaagtatgaagaggagttgaaaacaattggagtgatgtccagttgtgaggaagcatgtaaattcattggaagagaactga |
37796671 |
T |
|
| Q |
592 |
tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt |
691 |
Q |
| |
|
|||| || || |||| ||| ||||||||| | |||||| |||||||||||||| || |||||||||||| | | || |||| | || |||||||| || |
|
|
| T |
37796670 |
tgtctcgcgcatcttccttcactttaagtaagaatcatgtccttttgatgcttaaattcatccaatatctcaggagaagtcttctcccattggacaaatt |
37796571 |
T |
|
| Q |
692 |
tgtg |
695 |
Q |
| |
|
|||| |
|
|
| T |
37796570 |
tgtg |
37796567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 492 - 663
Target Start/End: Complemental strand, 2947922 - 2947751
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa |
591 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||| |||| | ||||||||| ||| | |||| | ||| |||| | |||||||||| ||| |||| |
|
|
| T |
2947922 |
ttctatggggaaagaataaatgcgtacaaagaagagttaaaaagagttggagtgaggtttgagtgtgtggaagtatgttatttcattggaagagagctaa |
2947823 |
T |
|
| Q |
592 |
tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctcc |
663 |
Q |
| |
|
|||| ||||| |||||||||||||||| || | |||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
2947822 |
tgtctcgtgcggcttctttctctttaaccaggaaccatgttctttggatgcttaacttcatccaatatctcc |
2947751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 492 - 695
Target Start/End: Complemental strand, 2921921 - 2921718
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa |
591 |
Q |
| |
|
||||| ||||||| ||||||| |||| |||||||||||||||||||||||||||||| || ||||||| ||||||| | ||||| ||||| ||||| | |
|
|
| T |
2921921 |
ttctacggggataaaataaataagtatgaagaggagttgaaaacaattggagtgatgtccagttgtgaggaagcatgcaatttcatcggaaaggaactta |
2921822 |
T |
|
| Q |
592 |
tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt |
691 |
Q |
| |
|
|||| | ||| ||| | | ||||||| | | ||||||| |||| ||||||||||| |||||||||||| | |||| |||| | ||| ||||||| || |
|
|
| T |
2921821 |
tgtctcatgcatctttctccgctttaagcaagaatcatgttattttaatgcttaacttcatccaatatctcagtaaaagtcttcttcctctggacaaatt |
2921722 |
T |
|
| Q |
692 |
tgtg |
695 |
Q |
| |
|
|||| |
|
|
| T |
2921721 |
tgtg |
2921718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 2932038 - 2931991
Alignment:
| Q |
441 |
gaacaaaacatttggatggtgcagcaaaccagttttttatgccagaaag |
489 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
2932038 |
gaacaaaacatttagatg-tgcagcaaaccagttttttatgccagaaag |
2931991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 492 - 696
Target Start/End: Original strand, 4915561 - 4915765
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa |
591 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||| |||||||| ||||| |||| |
|
|
| T |
4915561 |
ttctatggggatagaataaataagtacaaagaggagttgaaaacagttggagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaa |
4915660 |
T |
|
| Q |
592 |
tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt |
691 |
Q |
| |
|
||| ||||| |||||| |||||||||| | ||||||||||||||||||||||||| |||||||||||| | |||| |||| | ||||| ||||| || |
|
|
| T |
4915661 |
tgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgatgcttaactccatccaatatctcaggaaaagtcttcttcctttcgacaaatt |
4915760 |
T |
|
| Q |
692 |
tgtgg |
696 |
Q |
| |
|
||||| |
|
|
| T |
4915761 |
tgtgg |
4915765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 492 - 694
Target Start/End: Original strand, 1505813 - 1506015
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa |
591 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||| |||||||||| | | ||||| ||||||| || |||| |||||||||| ||||||| || |||||||| |
|
|
| T |
1505813 |
ttctacgggaatagaataaatgagtacacagaagagttgaaaatagtcggagttatgttcagttatgaggaagcatgtgacttcattgcaagagaactaa |
1505912 |
T |
|
| Q |
592 |
tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt |
691 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | |||| ||| | ||||||||||| || |
|
|
| T |
1505913 |
tgtctcgtgctgcttctttctctttaagaggaagtcatgttcttttgatgcttaacttcatccaatatcttaggaaaagccttcttcctttggacaactt |
1506012 |
T |
|
| Q |
692 |
tgt |
694 |
Q |
| |
|
||| |
|
|
| T |
1506013 |
tgt |
1506015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 492 - 695
Target Start/End: Complemental strand, 28025768 - 28025565
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa |
591 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||||||||| | |||||||||| || ||||||| ||||||| |||||||||| |||||| | |
|
|
| T |
28025768 |
ttctatggggatagaataaacaagtatgaagaagagttgaaaactgtaggagtgatgtccagttgtgaggaagcatgcagtttcattggaagagaactga |
28025669 |
T |
|
| Q |
592 |
tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt |
691 |
Q |
| |
|
|||| ||||| |||| | || |||||| || |||||||||||||||||||||||| |||||||||||| | |||| |||| | || |||||||| || |
|
|
| T |
28025668 |
tgtctcgtgcatcttccgttactctaagtaaaaatcatgttcttttgatgcttaacttcatccaatatctcaggaaaagtcttctcccgttggacaaatt |
28025569 |
T |
|
| Q |
692 |
tgtg |
695 |
Q |
| |
|
|||| |
|
|
| T |
28025568 |
tgtg |
28025565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University