View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11061_high_14 (Length: 270)
Name: NF11061_high_14
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11061_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 17377735 - 17377978
Alignment:
| Q |
17 |
agttcctagatgtatgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctg |
116 |
Q |
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| T |
17377735 |
agttcctagatgtatgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctg |
17377834 |
T |
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| Q |
117 |
ccaatactttcttctttgcattgttttgttagctcaaattttcgcgatgagccaagcatcctttgtttgtattgagcataatttaccaagcttcttttgc |
216 |
Q |
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| T |
17377835 |
ccaatactttcttctttgcattgttttgttagctcaaattttcgcgatgagccaagcatcctttgtttgtattgagcataatttaccaagcttcttttgc |
17377934 |
T |
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| Q |
217 |
cgttatagattatctttttctatctgttttcttaccaacctttg |
260 |
Q |
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| T |
17377935 |
cgttatagattatcttttcctatctgttttcttaccaacctttg |
17377978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 17392844 - 17392997
Alignment:
| Q |
16 |
cagttcctagatgtatgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtct |
115 |
Q |
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| T |
17392844 |
cagttcctagatgtatacctggtgtttttgttagtttcgatattcactactactgaatttgatggtttgaacaatataggcttattcaagtcaatggttt |
17392943 |
T |
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| Q |
116 |
gccaatactttcttctttgcattgttttgttagctcaaattttcgcgatgagcca |
170 |
Q |
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| T |
17392944 |
tccaatactttcatctttgcattgttttgttaactc-aattttcgtgatgagcca |
17392997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 17393030 - 17393110
Alignment:
| Q |
182 |
tttgtattgagcataatttaccaagcttcttttgccgttatagatt--atctttttctatctgttttcttaccaacctttg |
260 |
Q |
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||||||||||||||||||| ||| || || ||||| ||||||| | ||||||||||||||||||| ||||||||||||| |
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| T |
17393030 |
tttgtattgagcataatttcccatgcatcctttgctgttatagcatggatctttttctatctgtttttttaccaacctttg |
17393110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 17389722 - 17389769
Alignment:
| Q |
177 |
ctttgtttgtattgagcataatttaccaagcttcttttgccgttatag |
224 |
Q |
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| T |
17389722 |
ctttgtatgtattgagcataatttaccaagcttcctttgctgttatag |
17389769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 17384144 - 17384248
Alignment:
| Q |
17 |
agttcctagatgtatgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctg |
116 |
Q |
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|||||| |||||||| | ||| |||| |||| || ||||| || || |||||| ||||||||||| |||||||||||||||| |||||| | |||| |
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| T |
17384144 |
agttcccagatgtataccgggtatttttgttacttacaatatttactactactggatttgatggttcgaacaatataggcttattcaaatcaatggtcta |
17384243 |
T |
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| Q |
117 |
ccaat |
121 |
Q |
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||||| |
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| T |
17384244 |
ccaat |
17384248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 26052689 - 26052557
Alignment:
| Q |
37 |
gtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgca |
136 |
Q |
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||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||| ||||| | ||| |||||||||||| ||| |||| |
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| T |
26052689 |
gtgtttttgttagtttcaatatttgctactactgaatttgatggtttgaacaatataggtttatactaatcaatggtccgccaatactttcatctgtgca |
26052590 |
T |
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| Q |
137 |
ttgttttgttagctcaaattttcgcgatgagcca |
170 |
Q |
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||||||||||| ||| |||||||| ||||||||| |
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| T |
26052589 |
ttgttttgttaactc-aattttcgtgatgagcca |
26052557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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