View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11061_high_15 (Length: 252)

Name: NF11061_high_15
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11061_high_15
NF11061_high_15
[»] chr2 (6 HSPs)
chr2 (11-170)||(2295656-2295815)
chr2 (11-170)||(2311468-2311627)
chr2 (167-252)||(2295876-2295961)
chr2 (167-252)||(2311688-2311773)
chr2 (199-252)||(19016030-19016083)
chr2 (200-252)||(28846691-28846743)
[»] chr7 (3 HSPs)
chr7 (91-151)||(15996520-15996580)
chr7 (199-252)||(25590610-25590663)
chr7 (167-200)||(15996656-15996689)
[»] scaffold0118 (1 HSPs)
scaffold0118 (200-252)||(44128-44180)
[»] chr1 (4 HSPs)
chr1 (200-252)||(16893394-16893446)
chr1 (198-252)||(21694444-21694498)
chr1 (203-252)||(26232410-26232459)
chr1 (200-252)||(40257399-40257451)
[»] chr4 (5 HSPs)
chr4 (199-247)||(20608921-20608969)
chr4 (200-252)||(37443702-37443754)
chr4 (195-237)||(783310-783352)
chr4 (200-252)||(15180741-15180793)
chr4 (200-252)||(51250546-51250598)
[»] scaffold0021 (1 HSPs)
scaffold0021 (210-252)||(157011-157053)
[»] chr6 (3 HSPs)
chr6 (196-252)||(3779335-3779391)
chr6 (200-252)||(30127400-30127452)
chr6 (200-252)||(33549104-33549156)
[»] chr3 (2 HSPs)
chr3 (200-252)||(51903902-51903954)
chr3 (200-252)||(36720381-36720433)
[»] scaffold0258 (1 HSPs)
scaffold0258 (199-252)||(15347-15400)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 2295656 - 2295815
Alignment:
Q  11 cagagagatcatttttcaaatgaatgtcatgaaaaatttccatttccattggaaatcatactagaaaacagagagaaaattattacctgatagcaatatc 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2295656 cagagagatcatttttcaaatgaatgtcatggaaaatttccatttccattggaaatcatactagaaaacagagagaaaattattacctgatagcaatatc 2295755  T
Q  111 acttagttagctattgcttgctgcgcaagtaactgagcttaattaggattatatttctct 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2295756 acttagttagctattgcttgctgcgcaagtaactgagcttaattaggattatatttctct 2295815  T

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Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 2311468 - 2311627
Alignment:
Q  11 cagagagatcatttttcaaatgaatgtcatgaaaaatttccatttccattggaaatcatactagaaaacagagagaaaattattacctgatagcaatatc 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311468 cagagagatcatttttcaaatgaatgtcatggaaaatttccatttccattggaaatcatactagaaaacagagagaaaattattacctgatagcaatatc 2311567  T
Q  111 acttagttagctattgcttgctgcgcaagtaactgagcttaattaggattatatttctct 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311568 acttagttagctattgcttgctgcgcaagtaactgagcttaattaggattatatttctct 2311627  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 2295876 - 2295961
Alignment:
Q  167 ctctcatttgatcaataacaattcattctattcaacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2295876 ctctcatttgatcaataacaattcattctattcaacccacttaggttgatttgttggtattggcttgagatctgggagtgtactcc 2295961  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 2311688 - 2311773
Alignment:
Q  167 ctctcatttgatcaataacaattcattctattcaacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  2311688 ctctcatttgatcaataacaattcattctattcaatccacttaggttgacttgttggtattggcttgagatctgggagtgtactcc 2311773  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 19016030 - 19016083
Alignment:
Q  199 caacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||| ||||| |||| ||||||||||||||||  ||||||||| ||||    
T  19016030 caacccacttgggttggtctgatggtattggcttgagacttgggagtgtgctcc 19016083  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 28846691 - 28846743
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||||||||||||  |||||||| |||| || |||||||||| ||||    
T  28846691 aacccacttaggttgatctagtggtattgacttgggacctgggagtgtgctcc 28846743  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 15996520 - 15996580
Alignment:
Q  91 tattacctgatagcaatatcacttagttagctattgcttgctgcgcaagtaactgagctta 151  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  15996520 tattacctgatagcaatatcacttagttagttattgcttgttgcgcaagtaactgagctta 15996580  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 25590610 - 25590663
Alignment:
Q  199 caacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  25590610 caacccacttgggttgacctgttggtattggcttgagatctgggagtgtgctcc 25590663  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 15996656 - 15996689
Alignment:
Q  167 ctctcatttgatcaataacaattcattctattca 200  Q
    |||||||||||| |||||||||||||||||||||    
T  15996656 ctctcatttgattaataacaattcattctattca 15996689  T

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Target: scaffold0118 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 44180 - 44128
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  44180 aacccacttaggttgatctattgatattggcttgagatctgggagtgtgctcc 44128  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 16893394 - 16893446
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  16893394 aacccacttgggttgacctgttggtattggcttgagatttgggagtgtactcc 16893446  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 21694444 - 21694498
Alignment:
Q  198 tcaacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||||| |||||| ||| ||||||||||||||||  ||||||||| ||||    
T  21694444 tcaacccacttgggttgacctggtggtattggcttgagacttgggagtgtgctcc 21694498  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 26232459 - 26232410
Alignment:
Q  203 ccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||| ||||| |||  ||||||||||||||||||||||||||| ||||    
T  26232459 ccacttgggttggtctagtggtattggcttgagatctgggagtgtgctcc 26232410  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 40257399 - 40257451
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| |||||  ||| |||||||||||||||| |||||||||| ||||    
T  40257399 aacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcc 40257451  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 20608921 - 20608969
Alignment:
Q  199 caacccacttaggttgatctgttggtattggcttgagatctgggagtgt 247  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  20608921 caacccacttgggttgatctgatggtattggcttgagatccgggagtgt 20608969  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 37443702 - 37443754
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| |||||| ||  ||||||||||||| ||||||||||||||||||    
T  37443702 aacccacttgggttgacctagtggtattggcttgggatctgggagtgtactcc 37443754  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 783352 - 783310
Alignment:
Q  195 tattcaacccacttaggttgatctgttggtattggcttgagat 237  Q
    |||||||||||||||||||||| || |||||||| ||||||||    
T  783352 tattcaacccacttaggttgatatggtggtattgacttgagat 783310  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 15180741 - 15180793
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||||| ||| |||  ||||||||||||| || |||||||||||||||    
T  15180741 aacccacttagattggtctagtggtattggcttgggacctgggagtgtactcc 15180793  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 51250598 - 51250546
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||||||| ||||    
T  51250598 aacccacttgggttggcctggtggtattggcttgggatctgggagtgtgctcc 51250546  T

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Target: scaffold0021 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 157053 - 157011
Alignment:
Q  210 ggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  157053 ggttgacctgttggtattggcttgagatctgggagtgtgctcc 157011  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 3779335 - 3779391
Alignment:
Q  196 attcaacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||||||||||||| ||  ||||||||||||||||  ||||||||| ||||    
T  3779335 attcaacccacttaggttgacctagtggtattggcttgagacttgggagtgtgctcc 3779391  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 30127400 - 30127452
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| ||||| |||| ||||||||||||| | ||||||||||| ||||    
T  30127400 aacccacttgggttggtctggtggtattggcttggggtctgggagtgtgctcc 30127452  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 33549104 - 33549156
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| ||||| |||| ||||||||||||| || |||||||||| ||||    
T  33549104 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcc 33549156  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 51903954 - 51903902
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||| | |||||| ||||||||||||||||| ||||||||||||| ||||    
T  51903954 aacccacctgggttgacctgttggtattggcttgggatctgggagtgtgctcc 51903902  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 36720381 - 36720433
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| ||||| |||| ||||||||||||| ||| ||||||||| ||||    
T  36720381 aacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcc 36720433  T

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Target: scaffold0258 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 15400 - 15347
Alignment:
Q  199 caacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||| ||||| |||| ||||||||||||| || |||||||||| ||||    
T  15400 caacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcc 15347  T

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