View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11061_high_16 (Length: 251)

Name: NF11061_high_16
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11061_high_16
NF11061_high_16
[»] chr2 (7 HSPs)
chr2 (1-234)||(2295987-2296219)
chr2 (1-234)||(2311799-2312033)
chr2 (86-209)||(2322936-2323058)
chr2 (9-41)||(1435146-1435178)
chr2 (13-41)||(14780593-14780621)
chr2 (9-41)||(26773098-26773130)
chr2 (13-41)||(37755932-37755960)
[»] chr4 (4 HSPs)
chr4 (1-40)||(43124695-43124734)
chr4 (8-41)||(8030165-8030198)
chr4 (9-41)||(27104989-27105021)
chr4 (9-41)||(51954197-51954229)
[»] chr7 (9 HSPs)
chr7 (1-41)||(25590686-25590726)
chr7 (7-41)||(45228986-45229020)
chr7 (9-41)||(7309438-7309470)
chr7 (53-85)||(14579607-14579639)
chr7 (53-85)||(15996677-15996709)
chr7 (53-85)||(15998338-15998370)
chr7 (8-40)||(33181172-33181204)
chr7 (8-40)||(41975969-41976001)
chr7 (53-85)||(44059127-44059159)
[»] chr8 (4 HSPs)
chr8 (3-40)||(11492035-11492072)
chr8 (8-41)||(11819858-11819891)
chr8 (8-41)||(40791856-40791889)
chr8 (8-41)||(44780075-44780108)
[»] scaffold0122 (1 HSPs)
scaffold0122 (9-41)||(6883-6915)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-37)||(156954-156990)
[»] chr3 (4 HSPs)
chr3 (9-41)||(51903839-51903871)
chr3 (7-37)||(31520570-31520600)
chr3 (8-41)||(8075088-8075121)
chr3 (9-41)||(478809-478841)
[»] chr1 (6 HSPs)
chr1 (9-41)||(16893477-16893509)
chr1 (8-41)||(6122876-6122909)
chr1 (9-41)||(23471046-23471078)
chr1 (9-41)||(31794225-31794257)
chr1 (8-40)||(44961847-44961879)
chr1 (57-85)||(47863995-47864023)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-40)||(44069-44108)
[»] chr5 (3 HSPs)
chr5 (7-38)||(87388-87419)
chr5 (8-41)||(28285334-28285367)
chr5 (9-41)||(35705069-35705101)
[»] chr6 (4 HSPs)
chr6 (8-41)||(20213123-20213156)
chr6 (8-41)||(22107146-22107179)
chr6 (9-41)||(2484803-2484835)
chr6 (9-41)||(31622952-31622984)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2295987 - 2296219
Alignment:
Q  1 tttcttcagtgtcaatttgagtgggctaatttagcttcttcnnnnnnnnnnnttcattctattcattttacttggtttcctaataaaaatatctcatctt 100  Q
    ||||||| |||||||||||| ||||||||||||||||||||           | ||||||||||||||||||||||||||||||||||||||||||||||    
T  2295987 tttcttcggtgtcaatttgaatgggctaatttagcttcttcaaaaaaaaaaat-cattctattcattttacttggtttcctaataaaaatatctcatctt 2296085  T
Q  101 gtaattgtggttcaatagaaattagaatgaatgaaaagacttcaaggaaaatgctcatatacaagcaatagaagaaatctgctataacatattcagttag 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2296086 gtaatcgtggttcaatagaaattagaatgaatgaaaagacttcaaggaaaatgctcatatacaagcaatagaagaaatctgctataacatattcagttag 2296185  T
Q  201 agattacagttcaaaagcctatctaattaatcaa 234  Q
    |||||||||||||||||| |||||||||||||||    
T  2296186 agattacagttcaaaagcttatctaattaatcaa 2296219  T

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Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2311799 - 2312033
Alignment:
Q  1 tttcttcagtgtcaatttgagtgggctaatttagcttcttcnnnnnnnnnnn-ttcattctattcattttacttggtttcctaataaaaatatctcatct 99  Q
    ||||||| |||||||||||||||||||||||| ||||||||            ||||||||||||||||||||||||||||  |||||||||||||||||    
T  2311799 tttcttcggtgtcaatttgagtgggctaatttggcttcttcaaaaaaaataaattcattctattcattttacttggtttccgtataaaaatatctcatct 2311898  T
Q  100 tgtaattgtggttcaatagaaattagaatgaatgaaaagacttcaaggaaaatgctcatatacaagcaatagaagaaatctgctataacatattcagtta 199  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311899 tgtaattgtggttcaatagaaattagattgaatgaaaagacttcaaggaaaatgctcatatacaagcaatagaagaaatctgctataacatattcagtta 2311998  T
Q  200 gagattacagttcaaaagcctatctaattaatcaa 234  Q
    |||||||||||||||||||||||||||||||||||    
T  2311999 gagattacagttcaaaagcctatctaattaatcaa 2312033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 2322936 - 2323058
Alignment:
Q  86 aaaatatctcatcttgtaattgtggttcaatagaaattagaatgaatgaaaagacttcaaggaaaatgctcatatacaagcaatagaagaaatctgctat 185  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |    
T  2322936 aaaatctctgatcttgtaatt-tggttcaatagaaattagaatgaatgaaaagactacaaggaaaatgttcatatacaagcaatagaagaaatctgctct 2323034  T
Q  186 aacatattcagttagagattacag 209  Q
    |||| |||||||||||||||||||    
T  2323035 aacagattcagttagagattacag 2323058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 1435146 - 1435178
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    ||||||||||| |||||||||||||||||||||    
T  1435146 gtgtcaatttgggtgggctaatttagcttcttc 1435178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 14780593 - 14780621
Alignment:
Q  13 caatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||||||||||||||||||||    
T  14780593 caatttgagtgggctaatttagcttcttc 14780621  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 26773130 - 26773098
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    ||||||||||| |||||||||||||||||||||    
T  26773130 gtgtcaatttgggtgggctaatttagcttcttc 26773098  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 37755960 - 37755932
Alignment:
Q  13 caatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||||||||||||||||||||    
T  37755960 caatttgagtgggctaatttagcttcttc 37755932  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43124695 - 43124734
Alignment:
Q  1 tttcttcagtgtcaatttgagtgggctaatttagcttctt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43124695 tttcttcagtgtcaatttgagtgggctaatttagcttctt 43124734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 8030198 - 8030165
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||| |||||||||||||||||||||    
T  8030198 agtgtcaatttgggtgggctaatttagcttcttc 8030165  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 27105021 - 27104989
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    ||||||||||||||||||||||||| |||||||    
T  27105021 gtgtcaatttgagtgggctaatttaacttcttc 27104989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 51954197 - 51954229
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    ||||||||||| |||||||||||||||||||||    
T  51954197 gtgtcaatttgggtgggctaatttagcttcttc 51954229  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25590686 - 25590726
Alignment:
Q  1 tttcttcagtgtcaatttgagtgggctaatttagcttcttc 41  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  25590686 tttcttcggtgtcaatttgagtgggctaatttagcttcttc 25590726  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 45229020 - 45228986
Alignment:
Q  7 cagtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||| ||||||||||||||||||||||    
T  45229020 cagtgtcaatttaagtgggctaatttagcttcttc 45228986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 7309438 - 7309470
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||| ||||||||||||||||||||||    
T  7309438 gtgtcaatttaagtgggctaatttagcttcttc 7309470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 14579607 - 14579639
Alignment:
Q  53 ttcattctattcattttacttggtttcctaata 85  Q
    ||||||||||||||||| |||||||||||||||    
T  14579607 ttcattctattcatttttcttggtttcctaata 14579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 15996677 - 15996709
Alignment:
Q  53 ttcattctattcattttacttggtttcctaata 85  Q
    ||||||||||||||||| |||||||||||||||    
T  15996677 ttcattctattcatttttcttggtttcctaata 15996709  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 15998338 - 15998370
Alignment:
Q  53 ttcattctattcattttacttggtttcctaata 85  Q
    ||||||||||||||||| |||||||||||||||    
T  15998338 ttcattctattcatttttcttggtttcctaata 15998370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 33181204 - 33181172
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttctt 40  Q
    |||||||||||| ||||||||||||||||||||    
T  33181204 agtgtcaatttgggtgggctaatttagcttctt 33181172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 41975969 - 41976001
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttctt 40  Q
    ||||||||||| |||||||||||||||||||||    
T  41975969 agtgtcaatttaagtgggctaatttagcttctt 41976001  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 44059159 - 44059127
Alignment:
Q  53 ttcattctattcattttacttggtttcctaata 85  Q
    ||||||||||||||||| |||||||||||||||    
T  44059159 ttcattctattcattttccttggtttcctaata 44059127  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 11492072 - 11492035
Alignment:
Q  3 tcttcagtgtcaatttgagtgggctaatttagcttctt 40  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11492072 tcttcagtgtcaatttgggtgggctaatttagcttctt 11492035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 11819858 - 11819891
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||| |||||||||||||||||||||    
T  11819858 agtgtcaatttgggtgggctaatttagcttcttc 11819891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 40791889 - 40791856
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttcttc 41  Q
    ||||||||||| ||||||||||||||||||||||    
T  40791889 agtgtcaatttaagtgggctaatttagcttcttc 40791856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 44780108 - 44780075
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||| |||||||||||||||||||||    
T  44780108 agtgtcaatttgggtgggctaatttagcttcttc 44780075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 6915 - 6883
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||||||||||||||||||||||||    
T  6915 gtgtcaatttgagtgggctaatttagcttcttc 6883  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 156990 - 156954
Alignment:
Q  1 tttcttcagtgtcaatttgagtgggctaatttagctt 37  Q
    ||||||| |||||||||||||||||||||||||||||    
T  156990 tttcttcggtgtcaatttgagtgggctaatttagctt 156954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 51903871 - 51903839
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||||||||||||||||||||||||    
T  51903871 gtgtcaatttgagtgggctaatttagcttcttc 51903839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 31520600 - 31520570
Alignment:
Q  7 cagtgtcaatttgagtgggctaatttagctt 37  Q
    |||||||||||||||||||||||||||||||    
T  31520600 cagtgtcaatttgagtgggctaatttagctt 31520570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 8075121 - 8075088
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||| |||||||||||||||||||||    
T  8075121 agtgtcaatttgggtgggctaatttagcttcttc 8075088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 478841 - 478809
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||| ||||||||||||||||||||||    
T  478841 gtgtcaatttaagtgggctaatttagcttcttc 478809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 16893477 - 16893509
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||||||||||||||||||||||||    
T  16893477 gtgtcaatttgagtgggctaatttagcttcttc 16893509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 6122876 - 6122909
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||| |||||||||||||||||||||    
T  6122876 agtgtcaatttgggtgggctaatttagcttcttc 6122909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 23471078 - 23471046
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||||| ||||||||||||||||||    
T  23471078 gtgtcaatttgagttggctaatttagcttcttc 23471046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 31794257 - 31794225
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    ||||||||||| |||||||||||||||||||||    
T  31794257 gtgtcaatttgggtgggctaatttagcttcttc 31794225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 44961847 - 44961879
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttctt 40  Q
    |||||||||||| ||||||||||||||||||||    
T  44961847 agtgtcaatttgggtgggctaatttagcttctt 44961879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 47863995 - 47864023
Alignment:
Q  57 ttctattcattttacttggtttcctaata 85  Q
    |||||||||||||||||||||||||||||    
T  47863995 ttctattcattttacttggtttcctaata 47864023  T

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Target: scaffold0118 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44108 - 44069
Alignment:
Q  1 tttcttcagtgtcaatttgagtgggctaatttagcttctt 40  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  44108 tttcttcggtgtcaatttgagtgggataatttagcttctt 44069  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 87419 - 87388
Alignment:
Q  7 cagtgtcaatttgagtgggctaatttagcttc 38  Q
    ||||||||||||||||||||||||||||||||    
T  87419 cagtgtcaatttgagtgggctaatttagcttc 87388  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 28285334 - 28285367
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||| |||||||||||||||||||||    
T  28285334 agtgtcaatttgggtgggctaatttagcttcttc 28285367  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 35705069 - 35705101
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    ||||||||||| |||||||||||||||||||||    
T  35705069 gtgtcaatttgggtgggctaatttagcttcttc 35705101  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 20213123 - 20213156
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||| |||||||||||||||||||||    
T  20213123 agtgtcaatttgggtgggctaatttagcttcttc 20213156  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 22107146 - 22107179
Alignment:
Q  8 agtgtcaatttgagtgggctaatttagcttcttc 41  Q
    |||||||||||| |||||||||||||||||||||    
T  22107146 agtgtcaatttgggtgggctaatttagcttcttc 22107179  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 2484803 - 2484835
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    ||||||||||||||||||||||||| |||||||    
T  2484803 gtgtcaatttgagtgggctaatttaacttcttc 2484835  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 31622984 - 31622952
Alignment:
Q  9 gtgtcaatttgagtgggctaatttagcttcttc 41  Q
    ||||||||||| |||||||||||||||||||||    
T  31622984 gtgtcaatttgggtgggctaatttagcttcttc 31622952  T

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