View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11061_high_8 (Length: 426)
Name: NF11061_high_8
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11061_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 3 - 426
Target Start/End: Original strand, 26003644 - 26004063
Alignment:
| Q |
3 |
taggatgataggatgccttcatttcattctttaacattcttcattacaattagtctgtagatagggaatgtgataatagttaacagaaagaaagacggtg |
102 |
Q |
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| T |
26003644 |
taggatgataggatgccttcatttcattctttaacattcttcattacaattagtcagtagatagggaatgtgataatagttaacagaaagaaagacggtg |
26003743 |
T |
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| Q |
103 |
ccctaaaatagagtacctagatattattctgtaaaaatagcagaaatttggtgaaattttgtaacctgtagctgaggagagagggaataggatgtataaa |
202 |
Q |
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| T |
26003744 |
ccctaaaatagagtacctagatattattctgtaaaaatagcagaaatttggtaaaattttgtaacctatagctgaggaga----gaataggatgtataaa |
26003839 |
T |
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| Q |
203 |
gtaannnnnnngtaaaatgatcttgatttaatgataaacannnnnnnagtacaaagatattgcagaggttttgtatgttcttgcttgaatatgtgcatag |
302 |
Q |
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|||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26003840 |
gtaacttttttgtataatgatcttgatttaatgataaacatttttttagtacaaagatattgcagaggttttgtatgttcttgcttgaatgtgtgcatag |
26003939 |
T |
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| Q |
303 |
gacttcttttgtttacgaactgttcatgaaagtgaaatgctgggaatataaaatttatatatttgcatatagtttgccagcttattgagtgtgagtgatt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26003940 |
gacttcttttgtttacgaactgttcatgaaagtgaaatggtgggaatataaaatttatatatttgcatatggtttgccagcttattgagtgtgagtgatt |
26004039 |
T |
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| Q |
403 |
actttttcctctattacatgttga |
426 |
Q |
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| T |
26004040 |
actttttcctctattacatgttga |
26004063 |
T |
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