View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11061_low_11 (Length: 355)
Name: NF11061_low_11
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11061_low_11 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 5 - 338
Target Start/End: Original strand, 52211851 - 52212184
Alignment:
| Q |
5 |
gagagagatgaagatcctactggtgggaggatcaagtgggagcaggggaagctgaatggagctcccaataaggtggaagaaattgtgcaatttcatgttg |
104 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52211851 |
gagatagaagaagatcctactggtgggaggatcaagtgggagcaggggaagctgaatggagctcccaataaggtagaagaaattgtgcaatttcatgttg |
52211950 |
T |
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| Q |
105 |
gtgatgtgatctcatgcctgcaaaaggcctctcttataccaggtggtggagagtgcattttatatggaacggttatgggaagtattggagcattacatgc |
204 |
Q |
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| T |
52211951 |
gtgatgtgatctcatgcctgcaaaaggcctctcttataccaggtggtggagagtgcattttatatggaacagttatgggaagtattggagcattacatgc |
52212050 |
T |
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| Q |
205 |
ttttacttcacgagatgatgttgatttcttctctcatttggagatgcatatgaggcaggataatccacctttgtgtggaagagatcatatggcttataga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52212051 |
ttttacttcacgagatgatgttgatttcttctctcatttggagatgcatatgaggcaggataatccacctttgtgtggaagagatcatatggcttataga |
52212150 |
T |
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| Q |
305 |
tccgcctattttcctgttaaggtatacctaatct |
338 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52212151 |
tccgcctattttcctgttaaggtatacctaatct |
52212184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 52215852 - 52215904
Alignment:
| Q |
39 |
agtgggagcaggggaagctgaatggagctcccaataaggtggaagaaattgtg |
91 |
Q |
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| T |
52215852 |
agtgggagtaggggaagctgaatggagctcccaataaggtggaagaatttgtg |
52215904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 338
Target Start/End: Original strand, 4192276 - 4192609
Alignment:
| Q |
5 |
gagagagatgaagatcctactggtgggaggatcaagtgggagcaggggaagctgaatggagctcccaataaggtggaagaaattgtgcaatttcatgttg |
104 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4192276 |
gagatagaagaagatcctactggtgggaggatcaagtgggagcagggtaagctgaatggagctcccaataaggtggaagaaattgtgcaatttcatgttg |
4192375 |
T |
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| Q |
105 |
gtgatgtgatctcatgcctgcaaaaggcctctcttataccaggtggtggagagtgcattttatatggaacggttatgggaagtattggagcattacatgc |
204 |
Q |
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| T |
4192376 |
gtgatgtgatctcatgcctgcaaaaggcctctcttataccaggtggtggagagtgcattttaaatggaacagttatgggaagtattggagcattacatgc |
4192475 |
T |
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| Q |
205 |
ttttacttcacgagatgatgttgatttcttctctcatttggagatgcatatgaggcaggataatccacctttgtgtggaagagatcatatggcttataga |
304 |
Q |
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| T |
4192476 |
ttttacttcacgagatgatgttgatttcttctctcatttggagatgcatatgaggcaggataatccacctttgtgtggaagagatcatatggcttataga |
4192575 |
T |
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| Q |
305 |
tccgcctattttcctgttaaggtatacctaatct |
338 |
Q |
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| T |
4192576 |
tccgcctattttcctgttaaggtatacctaatct |
4192609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 330
Target Start/End: Complemental strand, 47715500 - 47715175
Alignment:
| Q |
5 |
gagagagatgaagatcctactggtgggaggatcaagtgggagcaggggaagctgaatggagctcccaataaggtggaagaaattgtgcaatttcatgttg |
104 |
Q |
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|||| ||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| | |
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| T |
47715500 |
gagatagaagaagatcctactggtgggaagatcaagtgggagcagggaaagctgaatggagctcccaataaggttgaagaaattgtacaattccatgtag |
47715401 |
T |
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| Q |
105 |
gtgatgtgatctcatgcctgcaaaaggcctctcttataccaggtggtggagagtgcattttatatggaacggttatgggaagtattggagcattacatgc |
204 |
Q |
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| ||||||||| || || |||||||||| |||||| ||||||||||||||||||||||| |||||||||| |||||||||||| | || |||||||| || |
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| T |
47715400 |
gggatgtgatcacaagcttgcaaaaggcttctcttgtaccaggtggtggagagtgcattgtatatggaacagttatgggaagtgtcggtgcattacacgc |
47715301 |
T |
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| Q |
205 |
ttttacttcacgagatgatgttgatttcttctctcatttggagatgcatatgaggcaggataatccacctttgtgtggaagagatcatatggcttataga |
304 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||||||| |
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| T |
47715300 |
gtttacttcacgagatgatgttgattttttttctcatttggagatgcatatgagacaggacaatcctcctttgtgtggaagagaccacatggcttataga |
47715201 |
T |
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| Q |
305 |
tccgcctattttcctgttaaggtata |
330 |
Q |
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|| || |||||||||||||||||||| |
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| T |
47715200 |
tctgcttattttcctgttaaggtata |
47715175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 47858779 - 47859095
Alignment:
| Q |
14 |
gaagatcctactggtgggaggatcaagtgggagcaggggaagctgaatggagctcccaataaggtggaagaaattgtgcaatttcatgttggtgatgtga |
113 |
Q |
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| T |
47858779 |
gaagatcctactagtgggaagatcaagtgggagcagggaaagctgaatggagctctcaataaggttgaagaaattgtacaattccatgtaggggatgtga |
47858878 |
T |
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| Q |
114 |
tctcatgcctgcaaaaggcctctcttataccaggtggtggagagtgcattttatatggaacggttatgggaagtattggagcattacatgcttttacttc |
213 |
Q |
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| T |
47858879 |
tcacaagcttgcaaaaagctgctcttgtaccaggtggtggagagtgcattgtatatggaaccgttatgggatgtgttggcgcattacacgcgtttacttc |
47858978 |
T |
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| Q |
214 |
acgagatgatgttgatttcttctctcatttggagatgcatatgaggcaggataatccacctttgtgtggaagagatcatatggcttatagatccgcctat |
313 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| |||||| |
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| T |
47858979 |
acgagatgatgttgatttcttttctcatttggagatgcatatgagacaggacaatcctcctttgtgtggaagagaccacatggcttatagatctgcctat |
47859078 |
T |
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| Q |
314 |
tttcctgttaaggtata |
330 |
Q |
| |
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||||||||||||||||| |
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| T |
47859079 |
tttcctgttaaggtata |
47859095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 22152 - 22096
Alignment:
| Q |
17 |
gatcctactggtgggaggatcaagtgggagcaggggaagctgaatggagctcccaat |
73 |
Q |
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| T |
22152 |
gatcctactggtgggaggatcaagtgggagcaggtgaagctgaatggagctcccaat |
22096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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