View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11061_low_14 (Length: 305)
Name: NF11061_low_14
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11061_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 38679831 - 38679563
Alignment:
| Q |
14 |
agagaatgataaaaaagtatcagccatcaataaatctaaaatcaattcattatgaagtataagctacattactagcttcaaggttaacgcaagtttgggt |
113 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38679831 |
agagaacgataaaaaagtataagccatcaataaatctaaaatcaattcattatgacgcataagctacattactagcttcaaggttaacgcaagtttgggt |
38679732 |
T |
|
| Q |
114 |
aaaaagcacttcaaatagtagataagtgtgacatggaaaactcttcttcaaacgccaaaccaaacaagtacttaattttgcacaactacattgattgtca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
38679731 |
aaaaagcacttcaaatagtagataagtgtgacatggaaaactcttcttcaaacgcca--------aagaacttaattttgcacaactacattgattgtca |
38679640 |
T |
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| Q |
214 |
tatgcgcgactattgttttgcaaattgcattcctctttcctttgtctaatactacataatgcttctttggaagttat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38679639 |
tatgcgcgactattgttttgcaaattgcattcctctttcctttgtctaatgctacataatgcttctttggaagttat |
38679563 |
T |
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