View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11061_low_18 (Length: 252)

Name: NF11061_low_18
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11061_low_18
NF11061_low_18
[»] chr2 (6 HSPs)
chr2 (11-170)||(2295656-2295815)
chr2 (11-170)||(2311468-2311627)
chr2 (167-252)||(2295876-2295961)
chr2 (167-252)||(2311688-2311773)
chr2 (199-252)||(19016030-19016083)
chr2 (200-252)||(28846691-28846743)
[»] chr7 (3 HSPs)
chr7 (91-151)||(15996520-15996580)
chr7 (199-252)||(25590610-25590663)
chr7 (167-200)||(15996656-15996689)
[»] scaffold0118 (1 HSPs)
scaffold0118 (200-252)||(44128-44180)
[»] chr1 (4 HSPs)
chr1 (200-252)||(16893394-16893446)
chr1 (198-252)||(21694444-21694498)
chr1 (203-252)||(26232410-26232459)
chr1 (200-252)||(40257399-40257451)
[»] chr4 (5 HSPs)
chr4 (199-247)||(20608921-20608969)
chr4 (200-252)||(37443702-37443754)
chr4 (195-237)||(783310-783352)
chr4 (200-252)||(15180741-15180793)
chr4 (200-252)||(51250546-51250598)
[»] scaffold0021 (1 HSPs)
scaffold0021 (210-252)||(157011-157053)
[»] chr6 (3 HSPs)
chr6 (196-252)||(3779335-3779391)
chr6 (200-252)||(30127400-30127452)
chr6 (200-252)||(33549104-33549156)
[»] chr3 (2 HSPs)
chr3 (200-252)||(51903902-51903954)
chr3 (200-252)||(36720381-36720433)
[»] scaffold0258 (1 HSPs)
scaffold0258 (199-252)||(15347-15400)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 2295656 - 2295815
Alignment:
Q  11 cagagagatcatttttcaaatgaatgtcatgaaaaatttccatttccattggaaatcatactagaaaacagagagaaaattattacctgatagcaatatc 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2295656 cagagagatcatttttcaaatgaatgtcatggaaaatttccatttccattggaaatcatactagaaaacagagagaaaattattacctgatagcaatatc 2295755  T
Q  111 acttagttagctattgcttgctgcgcaagtaactgagcttaattaggattatatttctct 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2295756 acttagttagctattgcttgctgcgcaagtaactgagcttaattaggattatatttctct 2295815  T

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Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 2311468 - 2311627
Alignment:
Q  11 cagagagatcatttttcaaatgaatgtcatgaaaaatttccatttccattggaaatcatactagaaaacagagagaaaattattacctgatagcaatatc 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311468 cagagagatcatttttcaaatgaatgtcatggaaaatttccatttccattggaaatcatactagaaaacagagagaaaattattacctgatagcaatatc 2311567  T
Q  111 acttagttagctattgcttgctgcgcaagtaactgagcttaattaggattatatttctct 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311568 acttagttagctattgcttgctgcgcaagtaactgagcttaattaggattatatttctct 2311627  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 2295876 - 2295961
Alignment:
Q  167 ctctcatttgatcaataacaattcattctattcaacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2295876 ctctcatttgatcaataacaattcattctattcaacccacttaggttgatttgttggtattggcttgagatctgggagtgtactcc 2295961  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 2311688 - 2311773
Alignment:
Q  167 ctctcatttgatcaataacaattcattctattcaacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  2311688 ctctcatttgatcaataacaattcattctattcaatccacttaggttgacttgttggtattggcttgagatctgggagtgtactcc 2311773  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 19016030 - 19016083
Alignment:
Q  199 caacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||| ||||| |||| ||||||||||||||||  ||||||||| ||||    
T  19016030 caacccacttgggttggtctgatggtattggcttgagacttgggagtgtgctcc 19016083  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 28846691 - 28846743
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||||||||||||  |||||||| |||| || |||||||||| ||||    
T  28846691 aacccacttaggttgatctagtggtattgacttgggacctgggagtgtgctcc 28846743  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 15996520 - 15996580
Alignment:
Q  91 tattacctgatagcaatatcacttagttagctattgcttgctgcgcaagtaactgagctta 151  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  15996520 tattacctgatagcaatatcacttagttagttattgcttgttgcgcaagtaactgagctta 15996580  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 25590610 - 25590663
Alignment:
Q  199 caacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  25590610 caacccacttgggttgacctgttggtattggcttgagatctgggagtgtgctcc 25590663  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 15996656 - 15996689
Alignment:
Q  167 ctctcatttgatcaataacaattcattctattca 200  Q
    |||||||||||| |||||||||||||||||||||    
T  15996656 ctctcatttgattaataacaattcattctattca 15996689  T

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Target: scaffold0118 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 44180 - 44128
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  44180 aacccacttaggttgatctattgatattggcttgagatctgggagtgtgctcc 44128  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 16893394 - 16893446
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  16893394 aacccacttgggttgacctgttggtattggcttgagatttgggagtgtactcc 16893446  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 21694444 - 21694498
Alignment:
Q  198 tcaacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||||| |||||| ||| ||||||||||||||||  ||||||||| ||||    
T  21694444 tcaacccacttgggttgacctggtggtattggcttgagacttgggagtgtgctcc 21694498  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 26232459 - 26232410
Alignment:
Q  203 ccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||| ||||| |||  ||||||||||||||||||||||||||| ||||    
T  26232459 ccacttgggttggtctagtggtattggcttgagatctgggagtgtgctcc 26232410  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 40257399 - 40257451
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| |||||  ||| |||||||||||||||| |||||||||| ||||    
T  40257399 aacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcc 40257451  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 20608921 - 20608969
Alignment:
Q  199 caacccacttaggttgatctgttggtattggcttgagatctgggagtgt 247  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  20608921 caacccacttgggttgatctgatggtattggcttgagatccgggagtgt 20608969  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 37443702 - 37443754
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| |||||| ||  ||||||||||||| ||||||||||||||||||    
T  37443702 aacccacttgggttgacctagtggtattggcttgggatctgggagtgtactcc 37443754  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 783352 - 783310
Alignment:
Q  195 tattcaacccacttaggttgatctgttggtattggcttgagat 237  Q
    |||||||||||||||||||||| || |||||||| ||||||||    
T  783352 tattcaacccacttaggttgatatggtggtattgacttgagat 783310  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 15180741 - 15180793
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||||| ||| |||  ||||||||||||| || |||||||||||||||    
T  15180741 aacccacttagattggtctagtggtattggcttgggacctgggagtgtactcc 15180793  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 51250598 - 51250546
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||||||| ||||    
T  51250598 aacccacttgggttggcctggtggtattggcttgggatctgggagtgtgctcc 51250546  T

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Target: scaffold0021 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 157053 - 157011
Alignment:
Q  210 ggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  157053 ggttgacctgttggtattggcttgagatctgggagtgtgctcc 157011  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 3779335 - 3779391
Alignment:
Q  196 attcaacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||||||||||||| ||  ||||||||||||||||  ||||||||| ||||    
T  3779335 attcaacccacttaggttgacctagtggtattggcttgagacttgggagtgtgctcc 3779391  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 30127400 - 30127452
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| ||||| |||| ||||||||||||| | ||||||||||| ||||    
T  30127400 aacccacttgggttggtctggtggtattggcttggggtctgggagtgtgctcc 30127452  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 33549104 - 33549156
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| ||||| |||| ||||||||||||| || |||||||||| ||||    
T  33549104 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcc 33549156  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 51903954 - 51903902
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||| | |||||| ||||||||||||||||| ||||||||||||| ||||    
T  51903954 aacccacctgggttgacctgttggtattggcttgggatctgggagtgtgctcc 51903902  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 36720381 - 36720433
Alignment:
Q  200 aacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    ||||||||| ||||| |||| ||||||||||||| ||| ||||||||| ||||    
T  36720381 aacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcc 36720433  T

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Target: scaffold0258 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 15400 - 15347
Alignment:
Q  199 caacccacttaggttgatctgttggtattggcttgagatctgggagtgtactcc 252  Q
    |||||||||| ||||| |||| ||||||||||||| || |||||||||| ||||    
T  15400 caacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcc 15347  T

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