View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11061_low_20 (Length: 229)

Name: NF11061_low_20

Description: NF11061

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11061_low_20

[»] chr4 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 136; E-Value: 4e-71

Query Start/End: Original strand, 15 - 216

Target Start/End: Original strand, 30522318 - 30522519

Alignment:

Q	15	tctcatccataatcataatctaatgatgttttcctttctaacattgtttaatataaaatctttggaatttagttgttgaactgtggtggccttagaatat	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30522318	tctcatccataatcataatctaatgatgttttcctttctaacattgtttaatataaaatctttggaatttagttgttgaactgtggtggccttagaatat	30522417	T

Q	115	tctcaccnnnnnnnnnnnnnnnnnnnnnnaaaggtttcaactttcaaggccttgtgagattcctgttcaaactccttagggtccctcctccataaaaata	214	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30522418	tctcaccctctccaactctctcctctctcaaaggtttcaactttcaaggccttgtgagattcctgttcaaactccttagggtccctcctccataaaaata	30522517	T

Q	215	tt	216	Q
		\|\|
T	30522518	tt	30522519	T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 47; E-Value: 6e-18

Query Start/End: Original strand, 19 - 93

Target Start/End: Original strand, 38899396 - 38899469

Alignment:

Q	19	atccataatcataatctaatgatgttttcctttctaacattgtttaatataaaatctttggaatttagttgttga	93	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	38899396	atccttaatcataatctaatgattttttcctttctaacattgtttaaaat-aaatttttggattttagttgttga	38899469	T

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