View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11061_low_21 (Length: 218)
Name: NF11061_low_21
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11061_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 31963213 - 31963014
Alignment:
| Q |
1 |
catctggtgtaggtggtatgaaatctgaagcataatcatgataactgccacggtgatagtaagaagttcccttgattaccgttaccaggtcaatgctgtc |
100 |
Q |
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| T |
31963213 |
catctggtgtaggtggtatgaaatctgaagcataatcatgataattgccacggcgatagtaagaagttcccttgattaccattaccaggtcaatgctgtc |
31963114 |
T |
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| Q |
101 |
ttcctgcaaagtccccaatgttaggttcagttaacttcctactggtttgatatcatttttatatcagatgaatatgatcacgatgcactcttgaatggaa |
200 |
Q |
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| T |
31963113 |
ttcctgcaaagtccccaatgttaggttcagttaacttcctactggtttgatatcatttttatatcagatgaatatgatcacgatgcactcttgaatggaa |
31963014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 31948396 - 31948237
Alignment:
| Q |
1 |
catctggtgtaggtggtatgaaatctgaagcataatcatgataactgccacggtgatagtaagaagttcccttgattaccgttaccaggtcaatgctgtc |
100 |
Q |
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| T |
31948396 |
catctggtgtcggcggtatgaaatccgaagcataatcatgatacttgccacgccggtagtaagaagttcccttgattaccgttagtaggtcaatacttcc |
31948297 |
T |
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| Q |
101 |
ttcctgcaaagtccccaatgttaggttcagttaacttcctactggtttgatatcattttt |
160 |
Q |
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| T |
31948296 |
ttcctgcgaatgtcccaaagttaggttcatttaaattccaactggtttgatatcattttt |
31948237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 31974855 - 31974752
Alignment:
| Q |
6 |
ggtgtaggtggtatgaaatctgaagcataatcatgataactgccacggtgatagtaagaagttcccttgattaccgttaccaggtcaatgctgtcttcct |
105 |
Q |
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| T |
31974855 |
ggtgtaggcggtatgaaatcagaaacatagtcatgatacttgccacggcggtagtaagaagctcccttgaggatggttaccaggtcaatgctgccttcct |
31974756 |
T |
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| Q |
106 |
gcaa |
109 |
Q |
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|||| |
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| T |
31974755 |
gcaa |
31974752 |
T |
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