View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11061_low_3 (Length: 617)
Name: NF11061_low_3
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11061_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 229 - 606
Target Start/End: Original strand, 15558025 - 15558404
Alignment:
| Q |
229 |
aaaagcattaagagcaaggaaagacattgatattatattcatgaataactagaatat--atatataaccctatgatcgaaagagatacataagagcatgg |
326 |
Q |
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| T |
15558025 |
aaaagcattaagagcaaggaaaaacattgatattatattcatgaataactagaatatatatatataaccctatgatcaaaagagatacataagagcatag |
15558124 |
T |
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| Q |
327 |
taaattacatctaatcacaacaaaagagagagataattagctactcattttgatggtagctttacacaattgagaataaatgagatgaaaatgcatcaaa |
426 |
Q |
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| T |
15558125 |
taaattacatctactcacaacagaagagagagataattagctactcattttgatggtagctttacacaattgagaataaatgagatgaaaatgcatcaaa |
15558224 |
T |
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| Q |
427 |
gattgtttcctctttgcttgaatgcttctctaacttgaatcgcctattcctattattttatcaaccgtgaacatgcaaaattttaatagtatggaaagta |
526 |
Q |
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| T |
15558225 |
gattgtttcctctttgcttggatgcttctctaacttgaatcgcctattcctattattctatcaaccgtgaacatgcaaaattttaagagtatggaaagta |
15558324 |
T |
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| Q |
527 |
acattttacaaagagaaattgtagttttcttagcaaattatcctttcttcaccacaaaaagtattagcctgatgtccatc |
606 |
Q |
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| T |
15558325 |
acattttacaaagagaaattgtagtttgcttagcaaattatcctttcttcaccacaaaaagtattagcctgatgttcatc |
15558404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 15557847 - 15558015
Alignment:
| Q |
17 |
tatgagagatcaaccatcttgtttaaacgtaatttcctcaaacggttattacaagacgaaaggcattaacaaccagcgatgtatgtgactgttaaaccta |
116 |
Q |
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| T |
15557847 |
tatgagagatcaatcatcttgtttaaacgtaatttcctcaaacggttattacaagacgaaaggcattaacaaccagcgatgtatgtgactgttaaaccta |
15557946 |
T |
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| Q |
117 |
tatctgttcctataatttatcaagtttgacaaatgattgtcctagattgatctaaaaagtagttctaat |
185 |
Q |
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| T |
15557947 |
tatttgttcctataatttatcaagtttgacaaatgattgtcctagattgatctaaaaagtagttctaat |
15558015 |
T |
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