View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11061_low_4 (Length: 604)
Name: NF11061_low_4
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11061_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 225 - 582
Target Start/End: Original strand, 31225277 - 31225635
Alignment:
| Q |
225 |
aatatatgtatttcacatgttagtctttttaataaccgaaatctggatgtgggagaaattgtggatgaaatcaaggtgttgtcgtggcggtgggctttgg |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225277 |
aatatatgtatttcacatgttagtctttttaataaccgaaatctggatgtgggagaaattgtggatgaaatcaaggtgttgtcgtggcggtgggctttgg |
31225376 |
T |
|
| Q |
325 |
ttagaattaatattcccc-gtgtatgtacttcaaatggtgttggaacccaagggagtgtcttttgcgaatggcttaagctgatccggtgctgttatgtgt |
423 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225377 |
ttagaattaatattcccccgtgtatgtacttcaaatggttttggaacccaagggagtgtcttttgcgaatggcttaagctgatccggtgctgttatgtgt |
31225476 |
T |
|
| Q |
424 |
tgggtgatgcggtgttctgcagtttttctggtgtcgggtttctgtcggttgttggtgttcgctgctgagtttttgggggctattttgtgggttcaaacaa |
523 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225477 |
tgggtgatgcggtgttctgcagtttttttggtgtcgggtttctgtcggttgttggtgttcgctgctgagtttttgggggctattttgtgggttcaaacaa |
31225576 |
T |
|
| Q |
524 |
cacttgttgttttttcctgtgcagctgctgtgttgcattagcaaggcctgttgtgttgg |
582 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225577 |
cacttgctgttttttcctgtgcagctgctgtgttgcattagcaaggcctgttgtgttgg |
31225635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 48655837 - 48656013
Alignment:
| Q |
11 |
agcataggtggtggtggcaatggaaggagaacataagggnnnnnnn-gggtgtggatctgttggtgcgatatgaagatatggtagggcgaagggcaaggg |
109 |
Q |
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| T |
48655837 |
agcataggtggtggcggcaatggaaggagaacataaggtttttttttgggtgtggatctgctggtgtgatatgaagatatggtagggcgaagggcaaggg |
48655936 |
T |
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| Q |
110 |
ttgtggtgatcgagggtgtggtcgatgggcgacagtggcgagagagggtggagggtgtggtagatgggggataacgg |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48655937 |
ttgtggtgatcgagggtgtggtcgatgggcgacagtggcgagagagggtggagggtgtggtagatgggggatgacgg |
48656013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 35400773 - 35400914
Alignment:
| Q |
250 |
tttttaataaccgaaatctggatgtgggagaaattgtggatgaaatcaaggtgttgtcgtggcggtgggctttggttagaattaatattcc-ccgtgtat |
348 |
Q |
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| T |
35400773 |
tttttaataaccgaaatccgtatgtgggtgaaatggtggatgatgtcaaggttttgtcttggagatgggctttggatagaatctctatgccaccgtgtat |
35400872 |
T |
|
| Q |
349 |
gtacttcaaatggtgttggaacccaagggagtgtcttttgcg |
390 |
Q |
| |
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||| | | |||||||||||||||||||||||||| ||||||| |
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| T |
35400873 |
gtattacgaatggtgttggaacccaagggagtgtattttgcg |
35400914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 397 - 537
Target Start/End: Complemental strand, 41310408 - 41310269
Alignment:
| Q |
397 |
ttaagctgatccggtgctgttatgtgttgggtgatgcggtgttctgcagtttttctggtgtcgggtttctgtcggttgttggtgttcgctgctgagtttt |
496 |
Q |
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||||| || ||||||||||| ||||||||||| |||||||| ||||||||| | || || ||| ||||||| ||| ||| ||||| |||||||||||| |
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| T |
41310408 |
ttaagttgctccggtgctgtcctgtgttgggtgctgcggtgtactgcagtttctttgctgccggtattctgtcagtt-ttgctgttctctgctgagtttt |
41310310 |
T |
|
| Q |
497 |
tgggggctattttgtgggttcaaacaacacttgttgttttt |
537 |
Q |
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|||||||| |||| ||||||||||| ||| || ||||||| |
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| T |
41310309 |
tgggggctcctttgcgggttcaaacagcacctgctgttttt |
41310269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 284 - 390
Target Start/End: Original strand, 24189580 - 24189687
Alignment:
| Q |
284 |
tgtggatgaaatcaaggtgttgtcgtggcggtgggctttggttagaattaatattcc-ccgtgtatgtacttcaaatggtgttggaacccaagggagtgt |
382 |
Q |
| |
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||||||||| |||||||| ||||||||||| ||| |||||| |||||| ||| || ||||||||||||| ||||||| ||| ||||||||| ||| |
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| T |
24189580 |
tgtggatgacatcaaggtcttgtcgtggcgatggtctttggatagaatctctatgcctccgtgtatgtactatgaatggtgctggtgcccaagggaatgt |
24189679 |
T |
|
| Q |
383 |
cttttgcg |
390 |
Q |
| |
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|||||||| |
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| T |
24189680 |
cttttgcg |
24189687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 11780037 - 11780162
Alignment:
| Q |
250 |
tttttaataaccgaaatctggatgtgggagaaattgtggatgaaatcaaggtgttgtcgtggcggtgggctttggttagaattaatat-tccccgtgtat |
348 |
Q |
| |
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|||||||| ||| |||| |||||||| |||||||||||| || || ||||| | ||||||||| ||| |||||| |||||| ||| |||||||||| |
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| T |
11780037 |
tttttaatggccggaatccggatgtggaagaaattgtggaggagattaaggtttggtcgtggcgttggtctttggacagaatttctatgcccccgtgtat |
11780136 |
T |
|
| Q |
349 |
gtacttcaaatggtgttggaacccaa |
374 |
Q |
| |
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||||| |||||| ||||| ||||| |
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| T |
11780137 |
gtactatgaatggttttggagcccaa |
11780162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 392
Target Start/End: Complemental strand, 42748860 - 42748719
Alignment:
| Q |
252 |
tttaataaccgaaatctggatgtgggagaaattgtggatgaaatcaaggtgttgtcgtggcggtgggctttggttagaattaatat-tccccgtgtatgt |
350 |
Q |
| |
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|||||||| |||| | ||| ||||| || ||||||||||| || |||||| | |||||||| ||| |||||| | | ||| ||| || |||||| ||| |
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| T |
42748860 |
tttaataatcgaattacggaggtgggcgagattgtggatgagataaaggtgatatcgtggcgttggtctttggatcgtattcttatatcgccgtgtttgt |
42748761 |
T |
|
| Q |
351 |
acttcaaatggtgttggaacccaagggagtgtcttttgcgaa |
392 |
Q |
| |
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||| ||||||||||||| |||| ||| ||||||||||||| |
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| T |
42748760 |
actatgaatggtgttggaatccaaaggaatgtcttttgcgaa |
42748719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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