View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11061_low_6 (Length: 503)
Name: NF11061_low_6
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11061_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Complemental strand, 36488306 - 36487832
Alignment:
| Q |
18 |
cttcaatgatgtgttgctagattatggaaacagatgagtcaaaattaattagtgaactttgccatgtctgcttggagcttatagaagaaacacaatcttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36488306 |
cttcaatgatgtgttgctagattatggaaacagatgagtcaaaattaattagtgaactttgccatgtctgcttggagcttatagaagaaacacaatcttg |
36488207 |
T |
|
| Q |
118 |
aactttgcgagaataagcatgaaacacaatcttgaactctgggagaaaaagaaagaaacatgtatgcttgtcctttgaaatgttggagtttgttgtgtga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36488206 |
aactttgcgagaataagcatgaaacacaatcttgaactctgggagaaaaagcaagaaacatgtatgcttgtcctttgaaatgttggagtttgttgtgtga |
36488107 |
T |
|
| Q |
218 |
acttgaatggttgaactcgttagaacatcacttcatggtattagaaacggctgcaaaatggtggttgatgaagttaacaaaaataaattaaatcactcgg |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36488106 |
acttgaatggttgaactcgttagagcatcacttcatggtattagaaac-gctgcaaaatggtggttgatgataataacaaaaataaattaaatcactcaa |
36488008 |
T |
|
| Q |
318 |
agtacggtatgatcttccaagattgtaaaattattctcatggatcacaacaggtacaaagttgtgttgactaggcatcaagcaaattgtagcactcatac |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36488007 |
agtacggtatgatcttccaagattgtaaaattattctcatgaatcacaacaggtacaaagttgtgttgactaggcatcaaacaaattgtagcactcatac |
36487908 |
T |
|
| Q |
418 |
tcttgcacaaacatttctatcttatgcttcacacaatctttataatataattccaaattatgttgctactattctt |
493 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
36487907 |
tcttgcacgaacatttctatcttatgcttcacacaatctttataatataatttcaaattaggttgctactattctt |
36487832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 384
Target Start/End: Original strand, 43015190 - 43015290
Alignment:
| Q |
283 |
tgatgaagttaacaaaaataaattaaatcactcggagtacggtatgatcttccaagattgtaaaattattctcatggatcacaacaggtacaaagttgtg |
382 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||| ||||||||| ||||||| || |||||||||| | | ||| || ||||||||| |||||||||||| |
|
|
| T |
43015190 |
tgatgatgttaacaaagataaatcaaatcacttagagtacggtgtgatcttgca-gattgtaaaactctcctcgtgaatcacaacaattacaaagttgtg |
43015288 |
T |
|
| Q |
383 |
tt |
384 |
Q |
| |
|
|| |
|
|
| T |
43015289 |
tt |
43015290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 490
Target Start/End: Complemental strand, 41687282 - 41687167
Alignment:
| Q |
375 |
aagttgtgttgactaggcatcaagcaaattgtagcactcatactcttgcacaaacatttctatcttatgcttcacacaatctttataatataattccaaa |
474 |
Q |
| |
|
|||||||||| ||||||| ||||||||| | ||| ||||| |||||||| | ||| | ||||| |||||||||||||| ||| | || ||||||||| |
|
|
| T |
41687282 |
aagttgtgtttactaggcgtcaagcaaacggaagcgctcatgctcttgcaaagacagctttatctcatgcttcacacaatatttttgatgtaattccaag |
41687183 |
T |
|
| Q |
475 |
ttatgttgctactatt |
490 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
41687182 |
ttttattgctactatt |
41687167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University