View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11061_low_7 (Length: 465)

Name: NF11061_low_7
Description: NF11061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11061_low_7
NF11061_low_7
[»] chr7 (30 HSPs)
chr7 (1-449)||(27517259-27517707)
chr7 (170-448)||(27495782-27496059)
chr7 (170-448)||(27502440-27502717)
chr7 (183-449)||(27508286-27508549)
chr7 (1-170)||(27493554-27493732)
chr7 (1-170)||(27500212-27500390)
chr7 (1-170)||(27515004-27515182)
chr7 (1-126)||(27496139-27496263)
chr7 (1-126)||(27502797-27502921)
chr7 (352-449)||(8427032-8427129)
chr7 (389-450)||(39360079-39360140)
chr7 (344-396)||(31771714-31771766)
chr7 (344-396)||(39169447-39169498)
chr7 (339-402)||(18350732-18350795)
chr7 (339-394)||(47941305-47941360)
chr7 (364-442)||(28340382-28340459)
chr7 (344-394)||(46104335-46104385)
chr7 (359-397)||(47616682-47616720)
chr7 (363-396)||(29363524-29363557)
chr7 (339-396)||(30812130-30812187)
chr7 (363-436)||(36532358-36532431)
chr7 (389-450)||(39334249-39334310)
chr7 (350-390)||(21453287-21453327)
chr7 (415-443)||(25014031-25014059)
chr7 (350-394)||(27378861-27378905)
chr7 (352-396)||(33645992-33646035)
chr7 (360-396)||(36060001-36060037)
chr7 (364-432)||(39591469-39591537)
chr7 (352-396)||(44615135-44615179)
chr7 (344-396)||(46056041-46056093)
[»] chr5 (14 HSPs)
chr5 (363-449)||(38047833-38047919)
chr5 (339-396)||(32408623-32408680)
chr5 (353-432)||(11095466-11095545)
chr5 (350-396)||(14716501-14716547)
chr5 (350-396)||(37588391-37588437)
chr5 (364-393)||(17777916-17777945)
chr5 (361-394)||(32544816-32544849)
chr5 (363-396)||(36638753-36638786)
chr5 (359-396)||(36774738-36774775)
chr5 (350-394)||(6582865-6582909)
chr5 (344-396)||(26005028-26005080)
chr5 (352-396)||(29201528-29201572)
chr5 (339-387)||(34736567-34736615)
chr5 (377-425)||(40499704-40499752)
[»] chr2 (12 HSPs)
chr2 (350-436)||(28803497-28803583)
chr2 (317-394)||(12313206-12313283)
chr2 (387-449)||(9478353-9478415)
chr2 (339-394)||(36043886-36043941)
chr2 (364-394)||(24097815-24097845)
chr2 (360-394)||(42409336-42409370)
chr2 (364-401)||(32757488-32757525)
chr2 (390-443)||(43456667-43456720)
chr2 (339-387)||(13869135-13869183)
chr2 (360-396)||(36852475-36852511)
chr2 (344-396)||(42419984-42420036)
chr2 (387-443)||(43985263-43985319)
[»] chr4 (18 HSPs)
chr4 (344-396)||(7694041-7694093)
chr4 (318-396)||(18628574-18628652)
chr4 (364-425)||(7730631-7730692)
chr4 (339-385)||(24091445-24091491)
chr4 (359-396)||(4191720-4191757)
chr4 (364-401)||(11262789-11262826)
chr4 (364-429)||(27623645-27623710)
chr4 (339-396)||(46715028-46715085)
chr4 (344-396)||(24087325-24087377)
chr4 (350-396)||(14011227-14011273)
chr4 (395-449)||(27123306-27123360)
chr4 (387-436)||(2996627-2996676)
chr4 (321-394)||(28300332-28300405)
chr4 (352-396)||(12650315-12650359)
chr4 (363-391)||(27721723-27721751)
chr4 (364-396)||(35405954-35405986)
chr4 (345-393)||(35958643-35958691)
chr4 (344-396)||(42866055-42866107)
[»] chr3 (19 HSPs)
chr3 (348-443)||(2100139-2100234)
chr3 (319-396)||(51510224-51510301)
chr3 (350-395)||(24887315-24887360)
chr3 (387-443)||(36646342-36646398)
chr3 (342-401)||(23952132-23952191)
chr3 (387-449)||(2413633-2413695)
chr3 (350-396)||(14548752-14548798)
chr3 (339-393)||(40665411-40665465)
chr3 (359-393)||(44284114-44284148)
chr3 (392-445)||(2321237-2321290)
chr3 (345-394)||(2719456-2719505)
chr3 (410-443)||(22667480-22667513)
chr3 (410-443)||(22724119-22724152)
chr3 (363-396)||(24158534-24158567)
chr3 (339-380)||(25447291-25447332)
chr3 (344-393)||(33725908-33725957)
chr3 (387-443)||(25182947-25183003)
chr3 (345-393)||(41724199-41724247)
chr3 (339-387)||(46886732-46886780)
[»] scaffold0141 (1 HSPs)
scaffold0141 (352-449)||(9732-9829)
[»] chr8 (11 HSPs)
chr8 (177-222)||(293204-293249)
chr8 (387-449)||(11415208-11415270)
chr8 (372-449)||(31915247-31915324)
chr8 (363-423)||(2107333-2107393)
chr8 (350-393)||(6509337-6509380)
chr8 (350-401)||(29592199-29592250)
chr8 (389-439)||(5069753-5069803)
chr8 (350-396)||(9836885-9836931)
chr8 (363-401)||(9912815-9912853)
chr8 (387-433)||(30987961-30988007)
chr8 (349-394)||(31862485-31862530)
[»] chr6 (14 HSPs)
chr6 (350-396)||(1275142-1275188)
chr6 (366-443)||(27857391-27857468)
chr6 (339-379)||(9604831-9604871)
chr6 (387-443)||(32917251-32917307)
chr6 (349-396)||(1401101-1401148)
chr6 (395-449)||(2460105-2460159)
chr6 (350-392)||(3168296-3168338)
chr6 (387-449)||(27693393-27693455)
chr6 (350-396)||(28088253-28088299)
chr6 (350-396)||(33787776-33787822)
chr6 (350-399)||(7149501-7149550)
chr6 (350-430)||(5730694-5730774)
chr6 (344-396)||(7945915-7945966)
chr6 (363-399)||(31686391-31686427)
[»] chr1 (6 HSPs)
chr1 (342-387)||(45975675-45975720)
chr1 (349-394)||(4700099-4700144)
chr1 (339-396)||(6279381-6279438)
chr1 (364-396)||(5924062-5924094)
chr1 (342-394)||(7137031-7137083)
chr1 (344-396)||(15515528-15515580)
[»] scaffold0110 (1 HSPs)
scaffold0110 (339-401)||(35821-35882)
[»] scaffold0428 (1 HSPs)
scaffold0428 (390-443)||(3963-4016)
[»] scaffold0057 (1 HSPs)
scaffold0057 (341-377)||(44030-44066)


Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 27517707 - 27517259
Alignment:
Q  1 ccaccatgaagaaaataaagatgcctcaaagcagaagcagcggataaatgttttcttatttcggtgataagctttgcttctaagtcccagcctctaccgg 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27517707 ccaccatgaagaaaataaagatgcctcaaagcagaagcaacggataaatgttttcttatttcggtgataagctttgcttctaagtcccagcctctaccgg 27517608  T
Q  101 aatcgccatcaagggtttggaagttatagatttcatgtgagtaagagtctctccatttgttcaaatcatagcaactggagaccttaaggttggcattgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27517607 aatcgccatcaagggtttggaagttatagatttcatgtgagtaagagtctctccatttgttcaaatcatagcaactggagaccttaaggttggcattgcc 27517508  T
Q  201 atttgaaggagaacaatcccaggactgtttaactgcaacgataattacagagctccattttagtacttaacattcatattctaaacagacaaagaagagc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27517507 atttgaaggagaacaatcccaggactgtttaactgcaacgataattacagagctccattttagtacttaacattcatattctaaacagacaaagaagagc 27517408  T
Q  301 ataaatgcatattgcacacaaaagaaaaagtatagtgcaattatttttgtataagctacaaactgttttcataagttatcctggagagcttatggacatg 400  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27517407 ataaatgcatgttgcacacaaaagaaaaagtatagtgcaattatttttgtataagctacaaactgttttcataagttatcctggagagcttatggacatg 27517308  T
Q  401 ttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27517307 ttatgagtggtttccataaactctctcaaacagtctcacaagtaattat 27517259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 170 - 448
Target Start/End: Complemental strand, 27496059 - 27495782
Alignment:
Q  170 agcaactggagaccttaaggttggcattgccatttgaaggagaacaatcccaggactgtttaactgcaacgataattacagagctccattttagtactta 269  Q
    |||||| |||||||| |||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||  |||| ||||| |||  ||||||||||||    
T  27496059 agcaaccggagacctcaaggttggtattgccattggaaggagcacaattccaggaatgtttaactgcaacagtaatcacagatctctgttttagtactta 27495960  T
Q  270 acattcatattctaaacagacaaagaagagcataaatgcatattgcacacaaaagaaaaagtatagtgcaattatttttgtataagctacaaactgtttt 369  Q
    || | ||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  27495959 acttgcatattccaatcagacaaagaagagcataaatgcatgttgcacacaaaagaaaaagcatagtgcaattatttttgtataggctacaaactgtttt 27495860  T
Q  370 cataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaatta 448  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||    
T  27495859 cataatttatcctggagagcttatggacatgtta-aagtggtttctataaactctctcaaacagtctcacaagtaatta 27495782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 170 - 448
Target Start/End: Complemental strand, 27502717 - 27502440
Alignment:
Q  170 agcaactggagaccttaaggttggcattgccatttgaaggagaacaatcccaggactgtttaactgcaacgataattacagagctccattttagtactta 269  Q
    |||||| |||||||| |||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||  |||| ||||| |||  ||||||||||||    
T  27502717 agcaaccggagacctcaaggttggtattgccattggaaggagcacaattccaggaatgtttaactgcaacagtaatcacagatctctgttttagtactta 27502618  T
Q  270 acattcatattctaaacagacaaagaagagcataaatgcatattgcacacaaaagaaaaagtatagtgcaattatttttgtataagctacaaactgtttt 369  Q
    || | ||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  27502617 acttgcatattccaatcagacaaagaagagcataaatgcatgttgcacacaaaagaaaaagcatagtgcaattatttttgtataggctacaaactgtttt 27502518  T
Q  370 cataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaatta 448  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||    
T  27502517 cataatttatcctggagagcttatggacatgtta-aagtggtttctataaactctctcaaacagtctcacaagtaatta 27502440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 183 - 449
Target Start/End: Complemental strand, 27508549 - 27508286
Alignment:
Q  183 cttaaggttggcattgccatttgaaggagaacaatcccag-gactgtttaactgcaacgataattacagagctccattttagtacttaacattcatattc 281  Q
    ||||||||||| ||||||||||||||||| ||||| |||  |||||||||||||||||  |||| ||||||||      ||||||||||  | |||||||    
T  27508549 cttaaggttggtattgccatttgaaggagcacaattccaaagactgtttaactgcaacagtaatcacagagct------tagtacttaagttgcatattc 27508456  T
Q  282 taaacagacaaagaagagcataaatgcatattgcacacaaaa--gaaaaagtatagtgcaattatttttgtataagctacaaactgttttcataagttat 379  Q
     |||||||||||||||||||||||||||  ||||| | ||||  |||||| ||| || ||| |||||| ||||| |||||||||| |||||||||| |||    
T  27508455 caaacagacaaagaagagcataaatgcacgttgcataaaaaaatgaaaaaatatcgtacaactattttcgtatacgctacaaactattttcataagctat 27508356  T
Q  380 cctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    |||  |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  27508355 ccttaagagcttatggacatgttataagtggtttccataaattctctcaaacagtctcacaagtaattat 27508286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 27493732 - 27493554
Alignment:
Q  1 ccaccatgaagaaaataaagatgcctcaaagcagaagcagcggataaatgttttcttatttcggt------------gataagctttgcttctaagtccc 88  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||| |  ||||| ||||||             ||||||||||| | |||||||||    
T  27493732 ccaccaagaagaaaataaggatgcctcaaagcagaagcagcagataaacgccttcttctttcggaacttcttttggagataagctttgatgctaagtccc 27493633  T
Q  89 agcctctaccggaatcgccatcaagggtttggaagttatagatttcatgtgagtaagagtctctccatttgttcaaatcata 170  Q
    | |||||||| ||||| | ||||||| |||||||||  |||| |||||| |||| |||||| ||||||||||||||||||||    
T  27493632 aacctctaccagaatcactatcaaggatttggaagt--tagacttcatgcgagt-agagtccctccatttgttcaaatcata 27493554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 27500390 - 27500212
Alignment:
Q  1 ccaccatgaagaaaataaagatgcctcaaagcagaagcagcggataaatgttttcttatttcggt------------gataagctttgcttctaagtccc 88  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||| |  ||||| ||||||             ||||||||||| | |||||||||    
T  27500390 ccaccaagaagaaaataaggatgcctcaaagcagaagcagcagataaacgccttcttctttcggaacttcttttggagataagctttgatgctaagtccc 27500291  T
Q  89 agcctctaccggaatcgccatcaagggtttggaagttatagatttcatgtgagtaagagtctctccatttgttcaaatcata 170  Q
    | |||||||| ||||| | ||||||| |||||||||  |||| |||||| |||| |||||| ||||||||||||||||||||    
T  27500290 aacctctaccagaatcactatcaaggatttggaagt--tagacttcatgcgagt-agagtccctccatttgttcaaatcata 27500212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 27515182 - 27515004
Alignment:
Q  1 ccaccatgaagaaaataaagatgcctcaaagcagaagcagcggataaatgttttcttatttcggt------------gataagctttgcttctaagtccc 88  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||| |  ||||| ||||||             ||||||||||| | |||||||||    
T  27515182 ccaccaagaagaaaataaggatgcctcaaagcagaagcagcagataaacgccttcttctttcggaacttcttttggagataagctttgatgctaagtccc 27515083  T
Q  89 agcctctaccggaatcgccatcaagggtttggaagttatagatttcatgtgagtaagagtctctccatttgttcaaatcata 170  Q
    | |||||||| ||||| | ||||||| |||||||||  |||| |||||| |||| |||||| ||||||||||||||||||||    
T  27515082 aacctctaccagaatcactatcaaggatttggaagt--tagacttcatgcgagt-agagtccctccatttgttcaaatcata 27515004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 27496263 - 27496139
Alignment:
Q  1 ccaccatgaagaaaataaagatgcctcaaagcagaagcagcggataaatgttttcttatttcggtgataagctttgcttctaagtcccagcctctaccgg 100  Q
    |||||| ||||||| ||  ||||| ||||||||||| ||| ||||||||| || | | ||| || |||||| |||  | |||||||||||||| |||| |    
T  27496263 ccaccaagaagaaagtatggatgcttcaaagcagaatcagtggataaatgatt-catcttttggagataagttttaatgctaagtcccagcctatacctg 27496165  T
Q  101 aatcgccatcaagggtttggaagtta 126  Q
    ||||||||||||||||||||||||||    
T  27496164 aatcgccatcaagggtttggaagtta 27496139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 27502921 - 27502797
Alignment:
Q  1 ccaccatgaagaaaataaagatgcctcaaagcagaagcagcggataaatgttttcttatttcggtgataagctttgcttctaagtcccagcctctaccgg 100  Q
    |||||| ||||||| ||  ||||| ||||||||||| ||| ||||||||| || | | ||| || |||||| |||  | |||||||||||||| |||| |    
T  27502921 ccaccaagaagaaagtatggatgcttcaaagcagaatcagtggataaatgatt-catcttttggagataagttttaatgctaagtcccagcctatacctg 27502823  T
Q  101 aatcgccatcaagggtttggaagtta 126  Q
    ||||||||||||||||||||||||||    
T  27502822 aatcgccatcaagggtttggaagtta 27502797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 449
Target Start/End: Original strand, 8427032 - 8427129
Alignment:
Q  352 taagctacaaactgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    ||||| ||||||| ||||||||||||||| | ||||| ||||||||| ||  | ||| |||||||||  ||| | |||||||||| ||||||| ||||    
T  8427032 taagcaacaaacttttttcataagttatctttgagagtttatggacacgtcgtaagttgtttccataggctcccccaaacagtctcacaagtacttat 8427129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 39360079 - 39360140
Alignment:
Q  389 cttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattatt 450  Q
    |||||||| |||| || ||| ||||||||||||||| ||||||||||| || ||||||||||    
T  39360079 cttatggatatgtcataagttgtttccataaactctatcaaacagtctcacgagtaattatt 39360140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 31771714 - 31771766
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||||||||| || ||||||||||| |||||| ||||| |||||||||    
T  31771714 tttttgtataagctataagctgttttcatatgttatcgtggagtgcttatgga 31771766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 39169498 - 39169447
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||||| ||| |||||||||||||||| |||||| |||||||||||||    
T  39169498 tttttgtataatctataaactgttttcataagctatcct-gagagcttatgga 39169447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 402
Target Start/End: Complemental strand, 18350795 - 18350732
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggagagcttatggacatgtt 402  Q
    |||| |||| ||||||| || || ||||||||||||| |||| ||||||||||||| |||||||    
T  18350795 aattgttttcgtataagttataagctgttttcataagctatcatggagagcttatgaacatgtt 18350732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 47941305 - 47941360
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggagagcttatg 394  Q
    ||||||||| |||||| ||| |||||||||||||||| ||||| |||||| |||||    
T  47941305 aattattttagtataatctataaactgttttcataagctatcccggagagtttatg 47941360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 442
Target Start/End: Complemental strand, 28340459 - 28340382
Alignment:
Q  364 tgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaag 442  Q
    |||||||| ||| ||| ||||||||||||||||||||| || ||| |||| ||||| ||||| | |||||||| |||||    
T  28340459 tgttttcagaagctatgctggagagcttatggacatgtcataagttgttttcataagctctc-ccaacagtctcacaag 28340382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 394
Target Start/End: Complemental strand, 46104385 - 46104335
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttatg 394  Q
    |||| |||||||||| ||||||||||||||||||||| || ||| ||||||    
T  46104385 ttttcgtataagctataaactgttttcataagttatcttgaagaacttatg 46104335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 47616720 - 47616682
Alignment:
Q  359 caaactgttttcataagttatcctggagagcttatggac 397  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  47616720 caaactgttttcataagtcatccttgagagcttatggac 47616682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 396
Target Start/End: Original strand, 29363524 - 29363557
Alignment:
Q  363 ctgttttcataagttatcctggagagcttatgga 396  Q
    ||||| ||||||||||||||||||||||||||||    
T  29363524 ctgttatcataagttatcctggagagcttatgga 29363557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 30812130 - 30812187
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    |||| |||| |||||||||| || |||||||||| || |||| |||||||||||||||    
T  30812130 aattgttttcgtataagctataagctgttttcattagctatcatggagagcttatgga 30812187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 436
Target Start/End: Original strand, 36532358 - 36532431
Alignment:
Q  363 ctgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtct 436  Q
    ||||||| |||||| ||| | ||||||||||| ||||||||| ||| | ||| ||||  |||||||||||||||    
T  36532358 ctgtttttataagtcatcttagagagcttatgaacatgttataagttggttctataagttctctcaaacagtct 36532431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 39334249 - 39334310
Alignment:
Q  389 cttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattatt 450  Q
    ||||||||||||| || | | |||||||||||||||  |||||||||| || ||||||||||    
T  39334249 cttatggacatgtcataaattgtttccataaactctaccaaacagtctcacgagtaattatt 39334310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 21453287 - 21453327
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagct 390  Q
    ||||||||| |||||||||||||||| |||||| |||||||    
T  21453287 tataagctataaactgttttcataagctatcctagagagct 21453327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 443
Target Start/End: Original strand, 25014031 - 25014059
Alignment:
Q  415 cataaactctctcaaacagtcttacaagt 443  Q
    |||||||||||||||||||||||||||||    
T  25014031 cataaactctctcaaacagtcttacaagt 25014059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 27378905 - 27378861
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatg 394  Q
    ||||| |||||| ||||||||||||  ||||||||||||||||||    
T  27378905 tataaactacaatctgttttcataaactatcctggagagcttatg 27378861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 33646035 - 33645992
Alignment:
Q  352 taagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||| |||||||||||||||| ||| ||||||||||||||||    
T  33646035 taagctataaactgttttcataagctat-ctggagagcttatgga 33645992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 36060001 - 36060037
Alignment:
Q  360 aaactgttttcataagttatcctggagagcttatgga 396  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  36060001 aaactgttttcataagctatcctggatagcttatgga 36060037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 39591537 - 39591469
Alignment:
Q  364 tgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaaca 432  Q
    |||||| ||||||| | |||||||||||||||| |||| ||  |  |||||||||| ||||||||||||    
T  39591537 tgttttgataagttttgctggagagcttatggatatgtcataggatgtttccataagctctctcaaaca 39591469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 44615179 - 44615135
Alignment:
Q  352 taagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||| ||||||||||||||||||| ||| ||||| |||||||    
T  44615179 taagctataaactgttttcataagttagccttgagagtttatgga 44615135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 46056093 - 46056041
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||| ||||||| ||| |||||||||||| ||||| | ||||||||||||    
T  46056093 tttttgtgtaagctataaattgttttcataagctatcccgtagagcttatgga 46056041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 363 - 449
Target Start/End: Complemental strand, 38047919 - 38047833
Alignment:
Q  363 ctgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||| ||||| |||||||||  ||||||| ||||    
T  38047919 ctgttttcataagctatcctggagagcttatggacatgtcataagttgtttccataagctctcccaaacagtcacacaagtacttat 38047833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 396
Target Start/End: Complemental strand, 32408680 - 32408623
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    |||||||||  ||||||||| ||||| |||||||||| ||||||| ||||||||||||    
T  32408680 aattattttcatataagctataaactattttcataagctatcctgaagagcttatgga 32408623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 432
Target Start/End: Complemental strand, 11095545 - 11095466
Alignment:
Q  353 aagctacaaactgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaaca 432  Q
    |||||||||  |||||||||||| ||| ||||||| ||||||||||||| || ||  ||||||| ||  |||||||||||    
T  11095545 aagctacaagttgttttcataagctattctggagaacttatggacatgtcataagctgtttccacaagttctctcaaaca 11095466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 14716547 - 14716501
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||| |||||||||||||||||||||| | |||| |||||||    
T  14716547 tataagctataaactgttttcataagttatcccgtagagtttatgga 14716501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 37588437 - 37588391
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||| ||  |||||||||||||||| ||||||||||||||||    
T  37588437 tataagctataagttgttttcataagttattctggagagcttatgga 37588391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 393
Target Start/End: Original strand, 17777916 - 17777945
Alignment:
Q  364 tgttttcataagttatcctggagagcttat 393  Q
    ||||||||||||||||||||||||||||||    
T  17777916 tgttttcataagttatcctggagagcttat 17777945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 394
Target Start/End: Complemental strand, 32544849 - 32544816
Alignment:
Q  361 aactgttttcataagttatcctggagagcttatg 394  Q
    |||||||||||||||||||| |||||||||||||    
T  32544849 aactgttttcataagttatcatggagagcttatg 32544816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 396
Target Start/End: Original strand, 36638753 - 36638786
Alignment:
Q  363 ctgttttcataagttatcctggagagcttatgga 396  Q
    |||||||||||||||||||| |||||||||||||    
T  36638753 ctgttttcataagttatcctagagagcttatgga 36638786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 36774775 - 36774738
Alignment:
Q  359 caaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  36774775 caaactgtttttataagctatcctggagagcttatgga 36774738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 6582909 - 6582865
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatg 394  Q
    |||||| || |||||||||||||||||| ||||| ||||||||||    
T  6582909 tataagttataaactgttttcataagttttcctgcagagcttatg 6582865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 26005080 - 26005028
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    |||| |||||||||| | |||||||||||||| || | |||||||||||||||    
T  26005080 ttttcgtataagctatatactgttttcataagctagcttggagagcttatgga 26005028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 29201528 - 29201572
Alignment:
Q  352 taagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||| || ||||||||||||  ||||||||||||||||||||    
T  29201528 taagctataagctgttttcataacctatcctggagagcttatgga 29201572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 34736615 - 34736567
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggaga 387  Q
    |||||||||||||||||||| |||||||| |||| || |||| ||||||    
T  34736615 aattatttttgtataagctataaactgttatcattagctatcttggaga 34736567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 425
Target Start/End: Complemental strand, 40499752 - 40499704
Alignment:
Q  377 tatcctggagagcttatggacatgttatgagtggtttccataaactctc 425  Q
    |||| |||||||||||||||||||| || ||| |||||||||| |||||    
T  40499752 tatcttggagagcttatggacatgtcataagttgtttccataagctctc 40499704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 436
Target Start/End: Complemental strand, 28803583 - 28803497
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtct 436  Q
    ||||||||||||  ||||||| |||  ||||||||||||||||||||||||| || ||| |||||||||   |||||||||||||||    
T  28803583 tataagctacaagttgttttcttaaactatcctggagagcttatggacatgtcataagttgtttccatatgttctctcaaacagtct 28803497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 394
Target Start/End: Complemental strand, 12313283 - 12313206
Alignment:
Q  317 cacaaaagaaaaagtatagtgcaattatttttgtataagctacaaactgttttcataagttatcctggagagcttatg 394  Q
    ||||||||| ||| || |||  |||||||||||| ||||||||||| ||||| |||||| |||| |||||||||||||    
T  12313283 cacaaaagataaaataaagttaaattatttttgtttaagctacaaattgtttacataagctatcttggagagcttatg 12313206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 449
Target Start/End: Original strand, 9478353 - 9478415
Alignment:
Q  387 agcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    ||||||||||||||| || ||| |||| |||||||||||||||||||||  ||||||| ||||    
T  9478353 agcttatggacatgtaataagttgtttgcataaactctctcaaacagtcacacaagtacttat 9478415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 36043886 - 36043941
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggagagcttatg 394  Q
    |||| |||| |||||||||| ||||||| ||||| ||||||| |||||||||||||    
T  36043886 aattgttttcgtataagctataaactgtcttcattagttatcttggagagcttatg 36043941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 394
Target Start/End: Original strand, 24097815 - 24097845
Alignment:
Q  364 tgttttcataagttatcctggagagcttatg 394  Q
    |||||||||||||||||||||||||||||||    
T  24097815 tgttttcataagttatcctggagagcttatg 24097845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 394
Target Start/End: Complemental strand, 42409370 - 42409336
Alignment:
Q  360 aaactgttttcataagttatcctggagagcttatg 394  Q
    |||||||||||||||||||| ||||||||||||||    
T  42409370 aaactgttttcataagttattctggagagcttatg 42409336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 32757525 - 32757488
Alignment:
Q  364 tgttttcataagttatcctggagagcttatggacatgt 401  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  32757525 tgttttcataagatatcatggagagcttatggacatgt 32757488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 43456720 - 43456667
Alignment:
Q  390 ttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagt 443  Q
    |||||||||||| |||||| |||| || || |||| ||||||||||||||||||    
T  43456720 ttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagt 43456667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 13869183 - 13869135
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggaga 387  Q
    |||||||||  | ||||||| || |||||||||||||||||||||||||    
T  13869183 aattattttcatctaagctataagctgttttcataagttatcctggaga 13869135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 36852475 - 36852511
Alignment:
Q  360 aaactgttttcataagttatcctggagagcttatgga 396  Q
    |||||||||||||||| |||| |||||||||||||||    
T  36852475 aaactgttttcataagctatcttggagagcttatgga 36852511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 42419984 - 42420036
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||||| ||| || || |||||||||| ||||||||| ||||||||||    
T  42419984 tttttgtataatctataagctattttcataagctatcctggatagcttatgga 42420036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 43985263 - 43985319
Alignment:
Q  387 agcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagt 443  Q
    ||||||||||||||| || ||| |||||  ||| |||||||||||||| ||||||||    
T  43985263 agcttatggacatgtcataagttgtttcagtaatctctctcaaacagttttacaagt 43985319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 7694093 - 7694041
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||||||||| || |||||||||||||||||||||||||| |||||||    
T  7694093 tttttgtataagctataagctgttttcataagttatcctggagagtttatgga 7694041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 396
Target Start/End: Complemental strand, 18628652 - 18628574
Alignment:
Q  318 acaaaagaaaaagtatagtgcaattatttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||| |||| ||||||  || | ||||| |||||| || ||||||||||||||||||||| |||||||||||||||    
T  18628652 acaaaaggaaaaatatagtcaaactgtttttatataagttataaactgttttcataagttatcttggagagcttatgga 18628574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 425
Target Start/End: Original strand, 7730631 - 7730692
Alignment:
Q  364 tgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctc 425  Q
    |||||||||||| ||||||||||||||||||||||||| || ||| |||||| ||| |||||    
T  7730631 tgttttcataagctatcctggagagcttatggacatgtcataagttgtttccttaagctctc 7730692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 385
Target Start/End: Original strand, 24091445 - 24091491
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctgga 385  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||||    
T  24091445 aattattttcatataagctataaactgttttcataagttatcctgga 24091491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 4191720 - 4191757
Alignment:
Q  359 caaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  4191720 caaactgttttcataagttatcctggagagcgtatgga 4191757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 11262826 - 11262789
Alignment:
Q  364 tgttttcataagttatcctggagagcttatggacatgt 401  Q
    |||||||||||| |||||||||||||||||||||||||    
T  11262826 tgttttcataagctatcctggagagcttatggacatgt 11262789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 27623645 - 27623710
Alignment:
Q  364 tgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaa 429  Q
    |||||||||||||||||||||||||||||||  ||||| ||  || ||||||||||| | ||||||    
T  27623645 tgttttcataagttatcctggagagcttatgagcatgtcataggttgtttccataaattttctcaa 27623710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 396
Target Start/End: Complemental strand, 46715085 - 46715028
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    |||| ||||| ||||||||| ||||| ||||||||||||||| ||||||| |||||||    
T  46715085 aattgtttttatataagctaaaaactattttcataagttatcttggagagtttatgga 46715028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 24087325 - 24087377
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  24087325 tttttatataagctttaaactgttttcataagttatcctggaaagtttatgga 24087377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 14011227 - 14011273
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||||||| ||||| |||||| |||| |||||||||||||||    
T  14011227 tataagctacaaaatgtttacataagctatcttggagagcttatgga 14011273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 449
Target Start/End: Complemental strand, 27123360 - 27123306
Alignment:
Q  395 gacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    ||||||| || ||| |||||||||| |||||||||||||||| ||||||| ||||    
T  27123360 gacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttat 27123306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 2996627 - 2996676
Alignment:
Q  387 agcttatggacatgttatgagtggtttccataaactctctcaaacagtct 436  Q
    ||||||||||||||| || ||| |||| ||||| ||||||||||||||||    
T  2996627 agcttatggacatgtcataagttgttttcataagctctctcaaacagtct 2996676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 28300405 - 28300332
Alignment:
Q  321 aaagaaaaagtatagtgcaattatttttgtataagctacaaactgttttcataagttatcctggagagcttatg 394  Q
    ||||||||| || |||  |||| ||||||||||||||| ||||| |||||||| | |||| || ||||||||||    
T  28300405 aaagaaaaaataaagttaaattgtttttgtataagctataaactattttcataggctatcttgaagagcttatg 28300332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 12650359 - 12650315
Alignment:
Q  352 taagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||| || ||||||||||||  ||||||||||||||||||||    
T  12650359 taagctataagctgttttcataacctatcctggagagcttatgga 12650315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 391
Target Start/End: Original strand, 27721723 - 27721751
Alignment:
Q  363 ctgttttcataagttatcctggagagctt 391  Q
    |||||||||||||||||||||||||||||    
T  27721723 ctgttttcataagttatcctggagagctt 27721751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Original strand, 35405954 - 35405986
Alignment:
Q  364 tgttttcataagttatcctggagagcttatgga 396  Q
    |||||||| ||||||||||||||||||||||||    
T  35405954 tgttttcaaaagttatcctggagagcttatgga 35405986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 35958643 - 35958691
Alignment:
Q  345 ttttgtataagctacaaactgttttcataagttatcctggagagcttat 393  Q
    |||| ||||||||| || ||||||||||||| |||||||||||| ||||    
T  35958643 ttttatataagctagaagctgttttcataagctatcctggagagtttat 35958691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 42866055 - 42866107
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||| ||||||||| ||  |||||||||||| |||||| |||||||||||||    
T  42866055 tttttatataagctataagttgttttcataagctatccttgagagcttatgga 42866107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 443
Target Start/End: Complemental strand, 2100234 - 2100139
Alignment:
Q  348 tgtataagctacaaactgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagt 443  Q
    ||||||||||| ||  ||||||||||||||||| ||||||||||| | |||||| || ||  || ||||||| ||||| |||||||||| ||||||    
T  2100234 tgtataagctataagttgttttcataagttatcttggagagcttaggaacatgtcataagctgtctccataagctctcacaaacagtctcacaagt 2100139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 51510301 - 51510224
Alignment:
Q  319 caaaagaaaaagtatagtgcaattatttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    |||||||||||||| |||  |||||||||  ||||| ||| ||  ||||||||||||||||| |||||||||||||||    
T  51510301 caaaagaaaaagtaaagtaaaattattttgatataaactataagttgttttcataagttatcgtggagagcttatgga 51510224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 24887360 - 24887315
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatgg 395  Q
    ||||||||| || ||||||||||||| |||||||||||||||||||    
T  24887360 tataagctaaaagctgttttcataagctatcctggagagcttatgg 24887315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 36646398 - 36646342
Alignment:
Q  387 agcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagt 443  Q
    ||||||||||||||  || |||||||||||||| ||||| |||| ||||||||||||    
T  36646398 agcttatggacatgccataagtggtttccataagctctcccaaatagtcttacaagt 36646342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 23952191 - 23952132
Alignment:
Q  342 tatttttgtataagctacaaactgttttcataagttatcctggagagcttatggacatgt 401  Q
    ||||||||||||||||  || |||||||||||| ||||  |||||||||||| |||||||    
T  23952191 tatttttgtataagctgtaagctgttttcataatttatggtggagagcttatagacatgt 23952132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 449
Target Start/End: Complemental strand, 2413695 - 2413633
Alignment:
Q  387 agcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    |||| |||||||||| |||||  |||| ||||| ||||||||||||| ||||||||| |||||    
T  2413695 agctcatggacatgtcatgagccgttttcataagctctctcaaacagacttacaagtgattat 2413633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 14548798 - 14548752
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||| ||  |||||||||||||||| ||||||||||||||||    
T  14548798 tataagctataagttgttttcataagttattctggagagcttatgga 14548752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 40665411 - 40665465
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggagagcttat 393  Q
    |||||||||||| |||| || ||  ||||||||||||||||| ||||||||||||    
T  40665411 aattatttttgtgtaagttataagatgttttcataagttatcttggagagcttat 40665465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 393
Target Start/End: Complemental strand, 44284148 - 44284114
Alignment:
Q  359 caaactgttttcataagttatcctggagagcttat 393  Q
    ||||||||||||||||| |||||||||||||||||    
T  44284148 caaactgttttcataagctatcctggagagcttat 44284114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 2321237 - 2321290
Alignment:
Q  392 atggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaa 445  Q
    |||| ||||| || ||| ||||||||||||||||||||||| ||| ||||||||    
T  2321237 atgggcatgtaataagttgtttccataaactctctcaaacaatctcacaagtaa 2321290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 2719456 - 2719505
Alignment:
Q  345 ttttgtataagctacaaactgttttcataagttatcctggagagcttatg 394  Q
    |||||| ||||||| |||||||||||||||| |||| |||||| ||||||    
T  2719456 ttttgtttaagctataaactgttttcataagctatcttggagaacttatg 2719505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 443
Target Start/End: Original strand, 22667480 - 22667513
Alignment:
Q  410 gtttccataaactctctcaaacagtcttacaagt 443  Q
    ||||||||||||||||||||||||||| ||||||    
T  22667480 gtttccataaactctctcaaacagtctcacaagt 22667513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 443
Target Start/End: Original strand, 22724119 - 22724152
Alignment:
Q  410 gtttccataaactctctcaaacagtcttacaagt 443  Q
    ||||||||||||||||||||||||||| ||||||    
T  22724119 gtttccataaactctctcaaacagtctcacaagt 22724152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 396
Target Start/End: Complemental strand, 24158567 - 24158534
Alignment:
Q  363 ctgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||||||| ||||||||||||||||||||    
T  24158567 ctgttttcataagctatcctggagagcttatgga 24158534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 25447332 - 25447291
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatc 380  Q
    |||| ||||||||||||||| |||||||||||||||| ||||    
T  25447332 aattgtttttgtataagctataaactgttttcataagctatc 25447291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 33725957 - 33725908
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttat 393  Q
    ||||||||||||||| |||||||||| ||||  ||||||||| |||||||    
T  33725957 tttttgtataagctataaactgtttttataaactatcctggaaagcttat 33725908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 25183003 - 25182947
Alignment:
Q  387 agcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagt 443  Q
    |||||||||| |||| || ||| |||| ||||| |||||||||||||||| ||||||    
T  25183003 agcttatggatatgtcataagttgttttcataagctctctcaaacagtctcacaagt 25182947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 41724199 - 41724247
Alignment:
Q  345 ttttgtataagctacaaactgttttcataagttatcctggagagcttat 393  Q
    |||| ||||||||| ||||||||||||| || |||||| ||||||||||    
T  41724199 ttttatataagctataaactgttttcatcagctatccttgagagcttat 41724247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 46886780 - 46886732
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggaga 387  Q
    |||||||||||||| ||||| || ||||||||||||| |||| ||||||    
T  46886780 aattatttttgtatgagctataagctgttttcataagctatcttggaga 46886732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 449
Target Start/End: Complemental strand, 9829 - 9732
Alignment:
Q  352 taagctacaaactgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    ||||| ||||||| ||||||||||||||| | |||||||||||||||  |  | ||| |||||||||  ||||| |||||||||| ||||||| ||||    
T  9829 taagcaacaaacttttttcataagttatctttgagagcttatggacacatcgtaagttgtttccataggctctcccaaacagtctcacaagtatttat 9732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 293204 - 293249
Alignment:
Q  177 ggagaccttaaggttggcattgccatttgaaggagaacaatcccag 222  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  293204 ggagaccttaaggttggtattgccatttgaaggagtacaatcccag 293249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 449
Target Start/End: Original strand, 11415208 - 11415270
Alignment:
Q  387 agcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    |||||||||||||||||| ||  ||||||||||||||||| ||||| ||| ||||||| ||||    
T  11415208 agcttatggacatgttataagctgtttccataaactctctaaaacaatctcacaagtacttat 11415270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 31915324 - 31915247
Alignment:
Q  372 taagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    |||| ||||||||||||||||||||| ||| || ||| ||||  |||| || ||||||||||||| ||||||| ||||    
T  31915324 taagctatcctggagagcttatggacttgtcataagttgtttgtataagctttctcaaacagtctcacaagtatttat 31915247  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 423
Target Start/End: Complemental strand, 2107393 - 2107333
Alignment:
Q  363 ctgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactc 423  Q
    ||||||||||||| |||| |||||||||||||||||||  || ||| ||| ||||||||||    
T  2107393 ctgttttcataagctatcttggagagcttatggacatgccataagttgttcccataaactc 2107333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 393
Target Start/End: Complemental strand, 6509380 - 6509337
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttat 393  Q
    ||||||||| || ||||||||||||| |||||||||||||||||    
T  6509380 tataagctataagctgttttcataagctatcctggagagcttat 6509337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 401
Target Start/End: Complemental strand, 29592250 - 29592199
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatggacatgt 401  Q
    ||||||||| || ||||||||||||| |||||  ||||||||||||||||||    
T  29592250 tataagctataatctgttttcataagctatcccagagagcttatggacatgt 29592199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 439
Target Start/End: Original strand, 5069753 - 5069803
Alignment:
Q  389 cttatggacatgttatgagtggtttccataaactctctcaaacagtcttac 439  Q
    |||||| ||||||||| ||  |||||||||| |||||||||||||||||||    
T  5069753 cttatgaacatgttataagatgtttccataagctctctcaaacagtcttac 5069803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 9836931 - 9836885
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    |||||| ||||| ||||||||||||| |||| |||||||||||||||    
T  9836931 tataagttacaacctgttttcataagctatcttggagagcttatgga 9836885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 9912853 - 9912815
Alignment:
Q  363 ctgttttcataagttatcctggagagcttatggacatgt 401  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  9912853 ctgttttcctaagctatcctggagagcttatggacatgt 9912815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 30988007 - 30987961
Alignment:
Q  387 agcttatggacatgttatgagtggtttccataaactctctcaaacag 433  Q
    ||||||||||||||| || ||| |||||||||| |||||||||||||    
T  30988007 agcttatggacatgtcataagttgtttccataagctctctcaaacag 30987961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 31862485 - 31862530
Alignment:
Q  349 gtataagctacaaactgttttcataagttatcctggagagcttatg 394  Q
    |||||||||| ||  ||||||||||||||||||| |||||||||||    
T  31862485 gtataagctataagatgttttcataagttatcctagagagcttatg 31862530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 1275142 - 1275188
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||    
T  1275142 tataagctataagctgttttcatatgttatcctggagagcttatgga 1275188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 27857391 - 27857468
Alignment:
Q  366 ttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagt 443  Q
    |||||||||| |||| ||||||||||||||| |||| || ||| |||| ||||| ||||| |||||||| | ||||||    
T  27857391 ttttcataagctatcatggagagcttatggagatgtcataagttgttttcataagctctcccaaacagtttcacaagt 27857468  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 9604831 - 9604871
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttat 379  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  9604831 aattatttttgtataagctataagctgttttcataagttat 9604871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 32917251 - 32917307
Alignment:
Q  387 agcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagt 443  Q
    ||||||||||||||| || ||| |||||||||| ||||| |||||||||| ||||||    
T  32917251 agcttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaagt 32917307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 1401101 - 1401148
Alignment:
Q  349 gtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    |||||||||| || ||||||||||||| |||| |||||||||||||||    
T  1401101 gtataagctataagctgttttcataagctatcatggagagcttatgga 1401148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 449
Target Start/End: Complemental strand, 2460159 - 2460105
Alignment:
Q  395 gacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    ||||||| || ||| |||||||||| |||||||||||||||| ||||||| ||||    
T  2460159 gacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttat 2460105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 392
Target Start/End: Complemental strand, 3168338 - 3168296
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagctta 392  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  3168338 tataagctataaactgttttcttaagctatcctggagagctta 3168296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 449
Target Start/End: Complemental strand, 27693455 - 27693393
Alignment:
Q  387 agcttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagtaattat 449  Q
    |||||||| |||||| || ||| ||||||||||| ||||||||| ||||| ||||||| ||||    
T  27693455 agcttatgaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtacttat 27693393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 28088299 - 28088253
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||| |||||||||||||||| |||| ||||||||| |||||    
T  28088299 tataagctataaactgttttcataagctatcatggagagctcatgga 28088253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 33787822 - 33787776
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    |||||| || || |||||||||||||||||| |||||||||||||||    
T  33787822 tataagttataagctgttttcataagttatcttggagagcttatgga 33787776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 7149550 - 7149501
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatggacat 399  Q
    ||||||||| ||||| |||||||||  ||||||||||||||||| |||||    
T  7149550 tataagctataaactattttcataaactatcctggagagcttatagacat 7149501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 430
Target Start/End: Original strand, 5730694 - 5730774
Alignment:
Q  350 tataagctacaaactgttttcataagttatcctggagagcttatggacatgttatgagtggtttccataaactctctcaaa 430  Q
    ||||||||| || ||  ||| ||||| |||| |||||||||| || |||||| || ||| ||||||||||||||| |||||    
T  5730694 tataagctataagctagttttataagctatcatggagagcttgtgaacatgtcataagttgtttccataaactctttcaaa 5730774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 7945966 - 7945915
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||||| ||| || ||||||||||| | ||||||||||||||||||||    
T  7945966 tttttgtataatctataacctgttttcata-gctatcctggagagcttatgga 7945915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 31686427 - 31686391
Alignment:
Q  363 ctgttttcataagttatcctggagagcttatggacat 399  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  31686427 ctgttttcataagctatcctggagagcttacggacat 31686391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 387
Target Start/End: Original strand, 45975675 - 45975720
Alignment:
Q  342 tatttttgtataagctacaaactgttttcataagttatcctggaga 387  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||||    
T  45975675 tatttttgtataagctacaagctgttttcataagctatcttggaga 45975720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 4700144 - 4700099
Alignment:
Q  349 gtataagctacaaactgttttcataagttatcctggagagcttatg 394  Q
    |||||||||| |||||||||| ||||  ||||||||||||||||||    
T  4700144 gtataagctataaactgtttttataaactatcctggagagcttatg 4700099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 6279381 - 6279438
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    |||| |||| |||||||||  ||||| |||||||||| |||||| |||||||||||||    
T  6279381 aattgttttcgtataagctttaaactattttcataagctatcctagagagcttatgga 6279438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Original strand, 5924062 - 5924094
Alignment:
Q  364 tgttttcataagttatcctggagagcttatgga 396  Q
    ||||||||||||||||||| |||||||||||||    
T  5924062 tgttttcataagttatcctagagagcttatgga 5924094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 7137083 - 7137031
Alignment:
Q  342 tatttttgtataagctacaaactgttttcataagttatcctggagagcttatg 394  Q
    ||||||||||||| ||| || ||||||||||||| |||| |||||| ||||||    
T  7137083 tatttttgtataatctataagctgttttcataagctatcttggagaacttatg 7137031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 15515528 - 15515580
Alignment:
Q  344 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 396  Q
    |||| |||||||||| ||  ||||||||||||||||| |||| ||||||||||    
T  15515528 ttttcgtataagctataagttgttttcataagttatcatggatagcttatgga 15515580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 401
Target Start/End: Complemental strand, 35882 - 35821
Alignment:
Q  339 aattatttttgtataagctacaaactgttttcataagttatcctggagagcttatggacatgt 401  Q
    |||||||||| ||||||||| |  ||| ||||||||  |||||||||||||||||||||||||    
T  35882 aattatttttatataagctatag-ctgctttcataaactatcctggagagcttatggacatgt 35821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 3963 - 4016
Alignment:
Q  390 ttatggacatgttatgagtggtttccataaactctctcaaacagtcttacaagt 443  Q
    |||||||||||| |||||  |||||||||||||||  |||||||||| ||||||    
T  3963 ttatggacatgtcatgagccgtttccataaactcttccaaacagtctcacaagt 4016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 44030 - 44066
Alignment:
Q  341 ttatttttgtataagctacaaactgttttcataagtt 377  Q
    |||||||||||||||||| || |||||||||||||||    
T  44030 ttatttttgtataagctataatctgttttcataagtt 44066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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