View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11062_high_1 (Length: 484)
Name: NF11062_high_1
Description: NF11062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11062_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 468
Target Start/End: Complemental strand, 26494305 - 26493848
Alignment:
| Q |
7 |
aagagacggttaagtaagagggagcaaagcttagtatatataatgagtaaatatgtttttaatcctaacagaatactcttctatcaagttttatcactac |
106 |
Q |
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| T |
26494305 |
aagagacggttaagtaagaggcagcaaa--------tatataatgagtaaatatgtttttaatcctaatagaatactcttctatcaagttttatcactac |
26494214 |
T |
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| Q |
107 |
nnnnnnnnttactcgtgtttagtcttcatttggtgatttcaaggactaaatacagcagaaaattttcatcagagtcaccaaatgggggactaaacatgta |
206 |
Q |
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| T |
26494213 |
aaaaaaa-ttatccgtgtttagtcttcatttggtgatttcaaggactaaatacagcagaaaattttcatcagagtcaccaaataggggactaaacatgta |
26494115 |
T |
|
| Q |
207 |
tggaatttttgtagagactaaacttgataggagaatattttatggggactaaaaatgtatttaacccacacatttatatc-----ggatttcttcatacc |
301 |
Q |
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| T |
26494114 |
tggaatttttgtagagactaaacttgataggagaatatttcattgggactaaaaatatatttaatccacacattcatatcaacacggatttcttcatacc |
26494015 |
T |
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| Q |
302 |
agacagtggtatctttctccctgagtacactagcaatgtatatgcaagctaaagcaatcagatatggtggatgtgccagcattaggtccatcttgtatgt |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26494014 |
agacagtggtatctttctccctgagtacactagcaatgtatatgcaagctaaagcaatcagatgtggtggatgtgccagcattaggtccatcttgtatgt |
26493915 |
T |
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| Q |
402 |
gtcatttacaagccccctgttggaattgaacagcatcaattatataatagaaactataatgccaaac |
468 |
Q |
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| T |
26493914 |
gtcatttacaagccccctgttggaattgaacagcatcaattatataatagaaactataatgccaaac |
26493848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 2846239 - 2846291
Alignment:
| Q |
300 |
ccagacagtggtatctttctccctgagtacactagcaatgtatatgcaagcta |
352 |
Q |
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| T |
2846239 |
ccagaaagtggtgtctttctccatgaggacactagcaatttatatgcaagcta |
2846291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 468
Target Start/End: Complemental strand, 19081275 - 19080807
Alignment:
| Q |
21 |
taagagggagcaaagcttagtatatataatgagt-aaatatgtttttaatcctaacagaatactcttctatcaagttttatcactacnnnnnnnn----t |
115 |
Q |
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||||||| | |||||||||||||||| |||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||| | |
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| T |
19081275 |
taagaggcaacaaagcttagtatata--atgagttaaatatgtttttaatcctaataaaatactcttctatcaagtttgatcactacaaaaaaaaaatat |
19081178 |
T |
|
| Q |
116 |
tactcgtgtttagtcttcatttggtgatttcaaggactaaatacagcagaaaattttcatcagagtcaccaaatgggggactaaacatgtatggaatttt |
215 |
Q |
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| | ||||||||||||||||||||||||||||| || |||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
19081177 |
catttatgtttagtcttcatttggtgatttcaagggctggatacagatgaaaactttcaccagaatcaccaaatgggggactaaacatgtatggaatttt |
19081078 |
T |
|
| Q |
216 |
tgtagagactaaacttgataggagaatattttatggggactaaaaatgtatttaaccca-------------cacatttatatc-----ggatttcttca |
297 |
Q |
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||||||||||||||| |||| |||||||||| || |||||||||||| ||||||||||| |||||| ||||| | | ||||||| |
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| T |
19081077 |
tgtagagactaaactcgataagagaatatttcatagggactaaaaatatatttaacccagttgaatactcaccacattcatatcaacacgaagttcttca |
19080978 |
T |
|
| Q |
298 |
taccagacagtggtatctttctccctgagtacactagcaatgtatatgcaagctaaagcaatcagatatggtggatgtgccagcattaggtccatcttgt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
19080977 |
taccagacagtggtatctttctccctgagtacactagcaatgtatatgcaagctaaagcaatcagatgtggtggatgtaccagcattaggtccatcttgt |
19080878 |
T |
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| Q |
398 |
atgtgtcatttacaagccccctgttggaattgaacagcatcaattatataatagaaactataatgccaaac |
468 |
Q |
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|||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |||||||||| |
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| T |
19080877 |
atgtatcatttacaagccccctgtaggaattcaacaaaatcaattatataatagaaactacaatgccaaac |
19080807 |
T |
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