View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11062_high_4 (Length: 277)
Name: NF11062_high_4
Description: NF11062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11062_high_4 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 20085877 - 20086117
Alignment:
| Q |
19 |
cacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttgga |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20085877 |
cacagaggcgaacaggaaggtcacctcgacacaagaagaggccgtacaccatttcatccactttaacagtataaaatttttcgccatttgtggcgttgga |
20085976 |
T |
|
| Q |
119 |
ggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatcta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20085977 |
ggacagataagagagaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatcta |
20086076 |
T |
|
| Q |
219 |
gaatcttggtttgaatgatttgtttgaggaacaagctcatt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20086077 |
gaatcttggtttgaatgatttgtttgaggaacaagctcatt |
20086117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 24385498 - 24385258
Alignment:
| Q |
19 |
cacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttgga |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
24385498 |
cacagagacgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttacagtatagaattttttgccatttgtggcgttgga |
24385399 |
T |
|
| Q |
119 |
ggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||| || || ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24385398 |
ggacagataagagagaagtaatttgaagttatcgtttgtgattatattgtggtttcttgagcaattataggaaagataaattggatcttgtgaaaatcta |
24385299 |
T |
|
| Q |
219 |
gaatcttggtttgaatgatttgtttgaggaacaagctcatt |
259 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
24385298 |
gaatcttgttttgaatcatttgtttgaggaacaagctcatt |
24385258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 22205284 - 22205046
Alignment:
| Q |
21 |
cagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttggagg |
120 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | | ||| ||| ||||||||||||||||||||| |
|
|
| T |
22205284 |
cagaggtgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttccgccatttgtggcgttggagg |
22205185 |
T |
|
| Q |
121 |
acagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatctaga |
220 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
22205184 |
acaaataagagagaagtaatttgaagtttttgttagtgattttactgtggtttcttgagcaattataggaaagataaaatggatcttgtgaaaatctaga |
22205085 |
T |
|
| Q |
221 |
atcttggtttgaatgatttgtttgaggaacaagctcatt |
259 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22205084 |
atcttgggttgaatgatttgtttgaggaacaagctcatt |
22205046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 20237790 - 20238030
Alignment:
| Q |
19 |
cacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttgga |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| | || ||| |||| || |||||||||||||||||| |
|
|
| T |
20237790 |
cacagaggcgattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttgga |
20237889 |
T |
|
| Q |
119 |
ggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatcta |
218 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| || |||||||| ||| || |
|
|
| T |
20237890 |
agacaaataagagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaatta |
20237989 |
T |
|
| Q |
219 |
gaatcttggtttgaatgatttgtttgaggaacaagctcatt |
259 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
20237990 |
gaatcttgttttgaatcatttgtttgaggaacaagctcatt |
20238030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 22131774 - 22132014
Alignment:
| Q |
19 |
cacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttgga |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| | || ||| |||| || |||||||||||||||||| |
|
|
| T |
22131774 |
cacagaggcgattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttgga |
22131873 |
T |
|
| Q |
119 |
ggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatcta |
218 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| || |||||||| ||| || |
|
|
| T |
22131874 |
agacaaataagagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaatta |
22131973 |
T |
|
| Q |
219 |
gaatcttggtttgaatgatttgtttgaggaacaagctcatt |
259 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
22131974 |
gaatcttgttttgaatcatttgtttgaggaacaagctcatt |
22132014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 20205211 - 20205437
Alignment:
| Q |
33 |
ggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttggaggacagataagaga |
132 |
Q |
| |
|
||||| ||||||||||||| |||||| || ||||| ||||||||||||| || ||| ||||||| ||| | |||||||| || ||| |||||| | |
|
|
| T |
20205211 |
ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca |
20205310 |
T |
|
| Q |
133 |
gaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatctagaatcttggtttga |
232 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||| || |||||||||||||||||||||||||||| ||| |||| ||||| | |||||||||| || || |
|
|
| T |
20205311 |
gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga |
20205410 |
T |
|
| Q |
233 |
atgatttgtttgaggaacaagctcatt |
259 |
Q |
| |
|
|| ||||||| ||||| | |||||||| |
|
|
| T |
20205411 |
atcatttgttcgaggagctagctcatt |
20205437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 22099234 - 22099460
Alignment:
| Q |
33 |
ggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttggaggacagataagaga |
132 |
Q |
| |
|
||||| ||||||||||||| |||||| || ||||| ||||||||||||| || ||| ||||||| ||| | |||||||| || ||| |||||| | |
|
|
| T |
22099234 |
ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca |
22099333 |
T |
|
| Q |
133 |
gaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatctagaatcttggtttga |
232 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||| || |||||||||||||||||||||||||||| ||| |||| ||||| | |||||||||| || || |
|
|
| T |
22099334 |
gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga |
22099433 |
T |
|
| Q |
233 |
atgatttgtttgaggaacaagctcatt |
259 |
Q |
| |
|
|| ||||||| ||||| | |||||||| |
|
|
| T |
22099434 |
atcatttgttcgaggagctagctcatt |
22099460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 21971772 - 21972001
Alignment:
| Q |
33 |
ggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttggaggacagataagaga |
132 |
Q |
| |
|
||||| ||||||||||||| |||||| || ||| | ||||||||||||| || ||| ||||||| ||| | |||||||| || ||| |||||| | |
|
|
| T |
21971772 |
ggaagatcacctcgacacatgaagagaccatacgcaatttcttccactttaagccaataaaattttttgccgatggtggcgttcgacaacaaataagaca |
21971871 |
T |
|
| Q |
133 |
gaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaa---aatctagaatcttggtt |
229 |
Q |
| |
|
|||||| ||||| ||| |||| |||||||||| || ||||||||||||||||||||||||||||| || ||||| |||| | | |||||||||| | |
|
|
| T |
21971872 |
gaagtagtttgatgtttttgtcagtgattgtattgtaatttcttgagcaattataggaaagataaaatggatcttctgaaagtattttagaatcttgtat |
21971971 |
T |
|
| Q |
230 |
tgaatgatttgtttgaggaacaagctcatt |
259 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |
|
|
| T |
21971972 |
ggaatcatttgtttgaggagcaagctcatt |
21972001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 48112 - 47872
Alignment:
| Q |
19 |
cacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttgga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||| | ||||||||||||||||||||||||| |
|
|
| T |
48112 |
cacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttgga |
48013 |
T |
|
| Q |
119 |
ggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatcta |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48012 |
ggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatcta |
47913 |
T |
|
| Q |
219 |
gaatcttggtttgaatgatttgtttgaggaacaagctcatt |
259 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
47912 |
gaatcttgttttgaatgttttgtttgaggaacaagctcatt |
47872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 15829 - 16066
Alignment:
| Q |
21 |
cagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttggagg |
120 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | | ||| ||| |||||| ||||||||||||| |
|
|
| T |
15829 |
cagaggtgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttctgccatt-gtggcgttggagg |
15927 |
T |
|
| Q |
121 |
acagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatctaga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15928 |
acagataagagagaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatctaga |
16027 |
T |
|
| Q |
221 |
atcttggtttgaatgatttgtttgaggaacaagctcatt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16028 |
atcttggtttgaatgatttgtttgaggaacaagctcatt |
16066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 5642 - 5399
Alignment:
| Q |
16 |
gagcacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgtt |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||| |||| | |||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
5642 |
gagcacagaggtgaacgggaaggtcacctcgacacatgaagaggccatacagcgtttcttccactttaacagtatgggatttttcgccatttgtggcgtt |
5543 |
T |
|
| Q |
116 |
ggaggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaat |
215 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
5542 |
ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactttggtttcttgagcaattataggaaagataaaagggatcttttgaaaat |
5443 |
T |
|
| Q |
216 |
ctagaatcttggtttgaatgatttgtttgaggaacaagctcatt |
259 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
5442 |
ctagtatcttgttttgaatagtttgtttgaggaacaagctcatt |
5399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University