View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11062_low_3 (Length: 391)
Name: NF11062_low_3
Description: NF11062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11062_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 374
Target Start/End: Complemental strand, 8789169 - 8788808
Alignment:
| Q |
12 |
aagcaaaggcctggctagtagtagaccaattaagtgggaatatatagctcattggtttatcacaaaaatgcataccacccccacccaaacattaagaata |
111 |
Q |
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| T |
8789169 |
aagcaaaggcctggctagtagtagaccaattaagtgggaatatatagctcattggtttatcacaaaaatacataccacccccacccaaacattaagaata |
8789070 |
T |
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| Q |
112 |
gaacnnnnnnntcaattaagatcaagaacatgttctatattgtcattattatggctgatatcattttcatttaatcaactttttctcattattttaaaag |
211 |
Q |
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| T |
8789069 |
gaacaaaaaaatcaattaagatcaagaacatgttctatattgtcattattatggctgatatcattttcatttaatcaactttttctcattattttaaa-g |
8788971 |
T |
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| Q |
212 |
gtttaattttcatgcacatgtaaatttaacaagttttacattaatatcaggataacttagctagtgtgcacttataagcccaccctaccattgagtaagg |
311 |
Q |
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| T |
8788970 |
gtttaattttcatgcacatgtaaatttaacaagttttacattaatatcagcataacttagctagtgtgcacttataagcccaccctaccattgagtaagg |
8788871 |
T |
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| Q |
312 |
ccgaaagagaagggaggccacctcataaagctgttaaagagagggattaacactgtatattgt |
374 |
Q |
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| T |
8788870 |
ccgaaagagaagggaggccacctcataaagctgttaaagagagggattaacactgtatattgt |
8788808 |
T |
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