View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11062_low_4 (Length: 277)

Name: NF11062_low_4
Description: NF11062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11062_low_4
NF11062_low_4
[»] chr6 (8 HSPs)
chr6 (19-259)||(20085877-20086117)
chr6 (19-259)||(24385258-24385498)
chr6 (21-259)||(22205046-22205284)
chr6 (19-259)||(20237790-20238030)
chr6 (19-259)||(22131774-22132014)
chr6 (33-259)||(20205211-20205437)
chr6 (33-259)||(22099234-22099460)
chr6 (33-259)||(21971772-21972001)
[»] scaffold0074 (1 HSPs)
scaffold0074 (19-259)||(47872-48112)
[»] scaffold0264 (1 HSPs)
scaffold0264 (21-259)||(15829-16066)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-259)||(5399-5642)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 20085877 - 20086117
Alignment:
Q  19 cacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttgga 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  20085877 cacagaggcgaacaggaaggtcacctcgacacaagaagaggccgtacaccatttcatccactttaacagtataaaatttttcgccatttgtggcgttgga 20085976  T
Q  119 ggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatcta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20085977 ggacagataagagagaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatcta 20086076  T
Q  219 gaatcttggtttgaatgatttgtttgaggaacaagctcatt 259  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20086077 gaatcttggtttgaatgatttgtttgaggaacaagctcatt 20086117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 24385498 - 24385258
Alignment:
Q  19 cacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttgga 118  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||    
T  24385498 cacagagacgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttacagtatagaattttttgccatttgtggcgttgga 24385399  T
Q  119 ggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatcta 218  Q
    |||||||||||||||||||||||||||||||| ||| |||||| || ||   ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24385398 ggacagataagagagaagtaatttgaagttatcgtttgtgattatattgtggtttcttgagcaattataggaaagataaattggatcttgtgaaaatcta 24385299  T
Q  219 gaatcttggtttgaatgatttgtttgaggaacaagctcatt 259  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  24385298 gaatcttgttttgaatcatttgtttgaggaacaagctcatt 24385258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 22205284 - 22205046
Alignment:
Q  21 cagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttggagg 120  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||  | | ||| ||| |||||||||||||||||||||    
T  22205284 cagaggtgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttccgccatttgtggcgttggagg 22205185  T
Q  121 acagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatctaga 220  Q
    ||| |||||||||||||||||||||||| |||||||||||| |||||   |||||||||||||||||||||||||||| || ||||||||||||||||||    
T  22205184 acaaataagagagaagtaatttgaagtttttgttagtgattttactgtggtttcttgagcaattataggaaagataaaatggatcttgtgaaaatctaga 22205085  T
Q  221 atcttggtttgaatgatttgtttgaggaacaagctcatt 259  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  22205084 atcttgggttgaatgatttgtttgaggaacaagctcatt 22205046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 20237790 - 20238030
Alignment:
Q  19 cacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttgga 118  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||| |||||||||||| | || ||| |||| ||  ||||||||||||||||||    
T  20237790 cacagaggcgattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttgga 20237889  T
Q  119 ggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatcta 218  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||   ||||||| |||||||| ||||||||||| || |||||||| |||  ||    
T  20237890 agacaaataagagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaatta 20237989  T
Q  219 gaatcttggtttgaatgatttgtttgaggaacaagctcatt 259  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  20237990 gaatcttgttttgaatcatttgtttgaggaacaagctcatt 20238030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 22131774 - 22132014
Alignment:
Q  19 cacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttgga 118  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||| |||||||||||| | || ||| |||| ||  ||||||||||||||||||    
T  22131774 cacagaggcgattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttgga 22131873  T
Q  119 ggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatcta 218  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||   ||||||| |||||||| ||||||||||| || |||||||| |||  ||    
T  22131874 agacaaataagagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaatta 22131973  T
Q  219 gaatcttggtttgaatgatttgtttgaggaacaagctcatt 259  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  22131974 gaatcttgttttgaatcatttgtttgaggaacaagctcatt 22132014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 20205211 - 20205437
Alignment:
Q  33 ggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttggaggacagataagaga 132  Q
    ||||| ||||||||||||| |||||| || ||||| ||||||||||||| ||   |||  ||||||| |||  | |||||||| ||  ||| |||||| |    
T  20205211 ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca 20205310  T
Q  133 gaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatctagaatcttggtttga 232  Q
    |||||||||||| ||| |||| |||||||||  ||   |||||||||||||||||||||||||||| ||| |||| ||||| | |||||||||| || ||    
T  20205311 gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga 20205410  T
Q  233 atgatttgtttgaggaacaagctcatt 259  Q
    || ||||||| ||||| | ||||||||    
T  20205411 atcatttgttcgaggagctagctcatt 20205437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 22099234 - 22099460
Alignment:
Q  33 ggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttggaggacagataagaga 132  Q
    ||||| ||||||||||||| |||||| || ||||| ||||||||||||| ||   |||  ||||||| |||  | |||||||| ||  ||| |||||| |    
T  22099234 ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca 22099333  T
Q  133 gaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatctagaatcttggtttga 232  Q
    |||||||||||| ||| |||| |||||||||  ||   |||||||||||||||||||||||||||| ||| |||| ||||| | |||||||||| || ||    
T  22099334 gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga 22099433  T
Q  233 atgatttgtttgaggaacaagctcatt 259  Q
    || ||||||| ||||| | ||||||||    
T  22099434 atcatttgttcgaggagctagctcatt 22099460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 21971772 - 21972001
Alignment:
Q  33 ggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttggaggacagataagaga 132  Q
    ||||| ||||||||||||| |||||| || ||| | ||||||||||||| ||    ||| ||||||| |||  | |||||||| ||  ||| |||||| |    
T  21971772 ggaagatcacctcgacacatgaagagaccatacgcaatttcttccactttaagccaataaaattttttgccgatggtggcgttcgacaacaaataagaca 21971871  T
Q  133 gaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaa---aatctagaatcttggtt 229  Q
    |||||| ||||| ||| |||| |||||||||| ||  ||||||||||||||||||||||||||||| || ||||| ||||   | | ||||||||||  |    
T  21971872 gaagtagtttgatgtttttgtcagtgattgtattgtaatttcttgagcaattataggaaagataaaatggatcttctgaaagtattttagaatcttgtat 21971971  T
Q  230 tgaatgatttgtttgaggaacaagctcatt 259  Q
     |||| ||||||||||||| ||||||||||    
T  21971972 ggaatcatttgtttgaggagcaagctcatt 21972001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 48112 - 47872
Alignment:
Q  19 cacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttgga 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||| | |||||||||||||||||||||||||    
T  48112 cacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttgga 48013  T
Q  119 ggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatcta 218  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||||   ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  48012 ggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatcta 47913  T
Q  219 gaatcttggtttgaatgatttgtttgaggaacaagctcatt 259  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  47912 gaatcttgttttgaatgttttgtttgaggaacaagctcatt 47872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 15829 - 16066
Alignment:
Q  21 cagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgttggagg 120  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||  | | ||| |||  |||||| |||||||||||||    
T  15829 cagaggtgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttctgccatt-gtggcgttggagg 15927  T
Q  121 acagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaatctaga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15928 acagataagagagaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatctaga 16027  T
Q  221 atcttggtttgaatgatttgtttgaggaacaagctcatt 259  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16028 atcttggtttgaatgatttgtttgaggaacaagctcatt 16066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 5642 - 5399
Alignment:
Q  16 gagcacagaggcgaacgggaaggtcacctcgacacaagaagaggccgtacaccatttcttccacttgaacagtatagaatttttcgccatttgtggcgtt 115  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| |||| | |||||||||||| |||||||| | ||||||||||||||||||||||    
T  5642 gagcacagaggtgaacgggaaggtcacctcgacacatgaagaggccatacagcgtttcttccactttaacagtatgggatttttcgccatttgtggcgtt 5543  T
Q  116 ggaggacagataagagagaagtaatttgaagttattgttagtgattgtactgctatttcttgagcaattataggaaagataaattgaatcttgtgaaaat 215  Q
    |||||||| |||||||||||||||||||||||| || ||||||||||||||    ||||||||||||||||||||||||||||  | ||||| |||||||    
T  5542 ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactttggtttcttgagcaattataggaaagataaaagggatcttttgaaaat 5443  T
Q  216 ctagaatcttggtttgaatgatttgtttgaggaacaagctcatt 259  Q
    |||| |||||| |||||||  |||||||||||||||||||||||    
T  5442 ctagtatcttgttttgaatagtttgtttgaggaacaagctcatt 5399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University