View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11063_high_1 (Length: 845)
Name: NF11063_high_1
Description: NF11063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11063_high_1 |
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| [»] scaffold0596 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 256 - 829
Target Start/End: Original strand, 2516808 - 2517376
Alignment:
| Q |
256 |
ttgaagcattccaaatcaaccgaaaaccattcttagtcttcttattcctcgcctaatttgtccaacatagaaagggaaccaatagattatgtggtgttgt |
355 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516808 |
ttgaagcattccaaatcaaccgaaaaccatttttagtcttcttattcctcgcctcatttgtccaacatagaaagggaaccaatagattatgtggtgttgt |
2516907 |
T |
|
| Q |
356 |
taattttaattgaagccacctcattatcttttgacacaccttcgccaccacttcacaatgcnnnnnnnggtgtagagccgtttcctccatcctcccacaa |
455 |
Q |
| |
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|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
2516908 |
tacttttaattgaagccacctcattatcttttgccacaccttcgccaccacttcacaatgcaaaaaaaggtgtagaattgtttcctccatcctcccacaa |
2517007 |
T |
|
| Q |
456 |
aacacacaactcttcgatgcatccgcgttcaaaactccttgaatataatagctagattcacccttgtcggaatgcggtcaagtaacaatgtccaagcaaa |
555 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
2517008 |
aacacacaactcttcgatgcatccgcgttcaaaactccttgaata-----gctagattcaccctcgtcggaatgcggtcaagtaacaatgtccaagcgaa |
2517102 |
T |
|
| Q |
556 |
tgctagccctttagacggagccccactcttccgaaggccaccaaacacaagctcctcgtctttggataaattaccatccaacaaaaacaacctctcaagt |
655 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || |
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| T |
2517103 |
tgctagccctttaaacggagccccactcttccgaaggccaccaaacacaagctcctcgtcttcggataaattaccatccaacaaatacaacctctcaggt |
2517202 |
T |
|
| Q |
656 |
ttcttgtaactagaattcactgagaaacataccctccggctcccacccccactcgtctctcccttcacctatcactatcccctccaacaataccaccaag |
755 |
Q |
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| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
2517203 |
tgcttgtaactagaattcactgagaaacataccctccagcctccacccccactcgtctctctcttcacctatcactatcccctccaacattaccaccaag |
2517302 |
T |
|
| Q |
756 |
ttacccactagctccgtttcccacacaaagagatatctacgccacccaaaatttcacctcccattctcctctct |
829 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| |
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| T |
2517303 |
ttacccactagctccgtttcccacacaaagagatctctacgccacccgaaatttcaactcccattctcctctct |
2517376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 13854474 - 13854432
Alignment:
| Q |
161 |
ccacgaaagaactttaatattctccaccaaatcatctacctcg |
203 |
Q |
| |
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|||||| | ||||||||| |||||||||||||||||||||||| |
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| T |
13854474 |
ccacgacaaaactttaatcttctccaccaaatcatctacctcg |
13854432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 432 - 817
Target Start/End: Complemental strand, 21018874 - 21018491
Alignment:
| Q |
432 |
gccgtttcctccatcctcccacaaaacacacaactcttcgatgcatccgcgttcaaaactccttgaatataatagctagattcacccttgtcggaatgcg |
531 |
Q |
| |
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||||||||||||| ||| ||| |||| |||||| |||| ||||||||||| |||||||| || |||| ||||||||||||||| |||| || || |
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| T |
21018874 |
gccgtttcctccaaccttccaaaaaaaacacaagtctttgatgcatccgcattcaaaacacccc-----taatcgctagattcacccttatcggtatacg |
21018780 |
T |
|
| Q |
532 |
gtcaagtaacaatgtccaagcaaatgctagccctttagacggagccccactcttccgaaggccaccaaacacaagctcctcgtctttggataaattacca |
631 |
Q |
| |
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|||||||||||| ||||||||||| |||| | |||||||||| ||| || | ||| ||| ||||||||||| ||||||| |||| |||||||||| || |
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| T |
21018779 |
gtcaagtaacaaagtccaagcaaaagctaacactttagacggcacccgacacctccaaagatcaccaaacacacgctcctcatcttcggataaattaaca |
21018680 |
T |
|
| Q |
632 |
tccaacaaaaacaacctctcaagtttcttgtaactagaattcactgagaaacat----accctccggctcccacccccactcgtctctcccttcacctat |
727 |
Q |
| |
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|| | |||||||| ||||||||| ||| |||| || ||||| |||||| | |||||||| |||||||||||| ||||||||||| || | |
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| T |
21018679 |
tcgatcaaaaacagcctctcaagaagcttataacacgagttcaccgagaaaactctccctcctccggcctccacccccactc-tctctcccttcccccac |
21018581 |
T |
|
| Q |
728 |
cactatcccctccaacaataccaccaagttacccactagctccgtttcccacacaaagagatatctacgccacccaaaatttcacctccc |
817 |
Q |
| |
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|| | ||| |||||||| || ||||||| |||| |||||||||||||||||||| || | ||| |||||| | ||||| |||||||| |
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| T |
21018580 |
caacaccccttccaacaaaccccccaagttctccacaagctccgtttcccacacaaataggtctcttcgccacaccaaattccacctccc |
21018491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 146 - 285
Target Start/End: Complemental strand, 21019166 - 21019027
Alignment:
| Q |
146 |
actcatactccaataccacgaaagaactttaatattctccaccaaatcatctacctcggccacaccattattaaatacaatgtcattccttcgcttcc-a |
244 |
Q |
| |
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||||| |||||||||||| || |||||||||||||| |||||||||||||||| ||| | |||||| |||| || ||||| |||||||||| ||||| | |
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| T |
21019166 |
actcaaactccaataccatgatagaactttaatattttccaccaaatcatctaagtcgacaacacca-tattgaacacaatatcattccttctcttccaa |
21019068 |
T |
|
| Q |
245 |
tatagcccaagttgaagcattccaaatcaaccgaaaaccat |
285 |
Q |
| |
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||||||||| | ||||||||||||||||| || |||| |
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| T |
21019067 |
aatagcccaaaccgtcgcattccaaatcaaccggaagccat |
21019027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 500 - 628
Target Start/End: Complemental strand, 16744234 - 16744105
Alignment:
| Q |
500 |
ataatagctagattcacccttg-tcggaatgcggtcaagtaacaatgtccaagcaaatgctagccctttagacggagccccactcttccgaaggccacca |
598 |
Q |
| |
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||||||||||| |||||||||| ||||||| |||||||||||||| || |||||||| |||| | ||||||||||||| | || ||||| ||| |||||| |
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| T |
16744234 |
ataatagctaggttcacccttgatcggaattcggtcaagtaacaacgttcaagcaaaagctaacactttagacggagcgcgacacttccaaagaccacca |
16744135 |
T |
|
| Q |
599 |
aacacaagctcctcgtctttggataaatta |
628 |
Q |
| |
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|||||| |||||| ||| |||||||||| |
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| T |
16744134 |
aacacacactcctcatctccggataaatta |
16744105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 102 - 254
Target Start/End: Complemental strand, 28801040 - 28800888
Alignment:
| Q |
102 |
ttccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaataccacgaaagaactttaatattctccaccaaatcatctacct |
201 |
Q |
| |
|
||||||||||| | |||||| |||| ||||||||||| | | ||||||||||||||||| | ||||| || ||||||||||||||||| ||||||| |
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| T |
28801040 |
ttccaacaccaatcataatacgaacatgatgctattttaagtttgctcatactccaataccaagctagaaccttgatattctccaccaaatcctctacct |
28800941 |
T |
|
| Q |
202 |
cggccacaccattattaaatacaatgtcattccttcgcttccatatagcccaa |
254 |
Q |
| |
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| |||||||||||| ||| | || ||||||| || |||||| ||| ||||| |
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| T |
28800940 |
caaccacaccattataaaagataacctcattccgtctcttccaaataacccaa |
28800888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 2926 - 2999
Alignment:
| Q |
90 |
cattcccgtggattccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaatacca |
163 |
Q |
| |
|
|||||| |||| ||||||||| |||||||| || |||||||||| |||||||| | ||||||||||||| |||| |
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|
| T |
2926 |
cattcctgtgggttccaacactacttgtaaaacaaacacgatgcaattttcaaccgactcatactccaaaacca |
2999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 494
Target Start/End: Complemental strand, 17192877 - 17192815
Alignment:
| Q |
432 |
gccgtttcctccatcctcccacaaaacacacaactcttcgatgcatccgcgttcaaaactcct |
494 |
Q |
| |
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||||||||||||| ||||||||| ||||||||| | |||||||| ||||| ||||| |||||| |
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|
| T |
17192877 |
gccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgcattcaacactcct |
17192815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 7859420 - 7859323
Alignment:
| Q |
101 |
attccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaataccacgaaagaactttaatattctccaccaaatcatcta |
198 |
Q |
| |
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|||| ||||||||| |||||| |||||| |||||| ||| |||||||||||||||||| | |||||| || ||||||||||||||||| |||| |
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| T |
7859420 |
attcgaacaccactcataatacaaacacgtcgctattatcagcttactcatactccaataccaagcaagaaccttgatattctccaccaaatcctcta |
7859323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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