View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11063_high_2 (Length: 755)
Name: NF11063_high_2
Description: NF11063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11063_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 703; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 11 - 737
Target Start/End: Complemental strand, 40635683 - 40634957
Alignment:
| Q |
11 |
cagagagtatttctggtgagcaatgacgccgacttcttatgctgttggctagttctattagtgcttttgatacctctgctgctagccttatgcaagggtc |
110 |
Q |
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| T |
40635683 |
cagagagtatttctggtgagcaatgacgccgacttcttatgctgttggctagttctattagtgcttttgatacctctgctgctagccttatgcaagggtc |
40635584 |
T |
|
| Q |
111 |
cttgaataggactcgaacagattgtggagtctgaaaaagatagtaaatcgaattaagagaaaaatactagaaaagctacagtagcaattctactagacgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635583 |
cttgaataggactcgaacagattgtggagtctgaaaaagataataaatcgaattaagagaaaaatactagaaaagctacagtagcaattctactagacgt |
40635484 |
T |
|
| Q |
211 |
gggtacagttaaatgatttctgtgatcaatcgttttgtgttcttataagcgtttatttatctgttttctttagagaagaattctcttttcttgcaaattg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635483 |
gggtacagttaaatgatttctgtgatcaatcgttttgtgttcttataagcgtttatttatctgttttctttagagaagaattctcttttcttgcaaattg |
40635384 |
T |
|
| Q |
311 |
ttctacagttaaaagcatcttagaatttgctaaatcgtagggtgaaggttgcccccactttacgcgggaaacatttggagggtgaagtttagacttatct |
410 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40635383 |
ttctacagttaaaagtatcttagaatttgctaaatcgtagggtgaaggttgcccccactttacgcgggagacatttggagggtgaagtttagacttatct |
40635284 |
T |
|
| Q |
411 |
ctgagtggctcaataacaacataatttgataccgcctttaaatttggattctggtaacattcaattccaaaagctaattcatggggtggtgattgtccca |
510 |
Q |
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| T |
40635283 |
ctgagtggctcaataacaacataatttgataccgcctttaaatttggattctggtaacattcgattccaaaagctaattcatggggtggtgattgtccca |
40635184 |
T |
|
| Q |
511 |
cttataaatataactactatttggactagtcaaagtggtaattccatcaaagaatataaaggtatcactgtcatttatcaaatgagatgctaaaccgtga |
610 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
40635183 |
cttataaatataactactatttggactagtcaaagtggtaattccatcaaagaatataaaggtatcactgtcatttatcaaatgaaatgctaaactgtga |
40635084 |
T |
|
| Q |
611 |
tcaggtacagattcacaaaatggtcaaaattatgttaagaactcagatgttaccctacctgaatttctgttctcaaacagccatgtagagctaccactgt |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635083 |
tcaggtacagattcacaaaatggtcaaaattatgttaagaactcagatgttaccctacctgaatttctgttctcaaacagccatgtagagctaccactgt |
40634984 |
T |
|
| Q |
711 |
atacccgaattggcgaagaacagttcc |
737 |
Q |
| |
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| T |
40634983 |
atacccgaattggcgaagaacagttcc |
40634957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 40647644 - 40647510
Alignment:
| Q |
13 |
gagagtatttctggtgagcaatgacgccgacttcttatgctgttggctagttctattagtgcttttgatacctctgctgctagccttatgcaagggtcct |
112 |
Q |
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||||| ||||||||||||||||| |||| |||| ||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
40647644 |
gagagaatttctggtgagcaatggcgcctactttttatgctgttggcaagttctattagtacttttgatacctctgctgctagtcttatgcaagggtcct |
40647545 |
T |
|
| Q |
113 |
tgaataggactcgaacagattgtggagtctgaaaa |
147 |
Q |
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|||| ||||||||||||||| ||| ||||||||| |
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| T |
40647544 |
tgaacaggactcgaacagatcttggtgtctgaaaa |
40647510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 634 - 737
Target Start/End: Complemental strand, 40646892 - 40646790
Alignment:
| Q |
634 |
tcaaaattatgttaagaactcagatgttaccctacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacag |
733 |
Q |
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||||| |||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40646892 |
tcaaatttatgttaagaactcaaatattatg-tacctgaatttctgttctcaaacaaccatgtagagctaccactgtatacccgaattgacgaagaacag |
40646794 |
T |
|
| Q |
734 |
ttcc |
737 |
Q |
| |
|
|||| |
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|
| T |
40646793 |
ttcc |
40646790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 4780464 - 4780567
Alignment:
| Q |
13 |
gagagtatttctggtgagcaatgacgccgacttcttatgctgttggctagttctattagtgcttttgatacctctgctgctagccttatgcaagggtcct |
112 |
Q |
| |
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||||||||||| || |||||||| || | ||||||||||||||| |||||||| ||| ||||||||||||||||||| | ||||||||| || |||| |
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| T |
4780464 |
gagagtatttcgggagagcaatgtcgacagtttcttatgctgttggaaagttctatcagtacttttgatacctctgctgcaacccttatgcatggatcct |
4780563 |
T |
|
| Q |
113 |
tgaa |
116 |
Q |
| |
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|||| |
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| T |
4780564 |
tgaa |
4780567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 666 - 733
Target Start/End: Original strand, 4780843 - 4780910
Alignment:
| Q |
666 |
tacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacag |
733 |
Q |
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|||||||||||| | ||||||||||||||| ||||||||||| || || || ||||| |||||||||| |
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| T |
4780843 |
tacctgaatttcggatctcaaacagccatgcagagctaccacggtgtagccaaattgacgaagaacag |
4780910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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