View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11063_low_3 (Length: 650)
Name: NF11063_low_3
Description: NF11063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11063_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 618
Target Start/End: Complemental strand, 44852576 - 44851967
Alignment:
| Q |
17 |
aaacatgtcacgattgccaaaagaaaacaacactttctcctccatccatcatatgaggcacccaagaaaagtaaaacctcgttctactcagtgctgcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44852576 |
aaacatgtcacgattgccaaaagaaaacaacactttctcctccatccatcatatgaggcacccaagaaaagtaaaacctcgttctactcagtgctgcaaa |
44852477 |
T |
|
| Q |
117 |
atgtaaatgtaaatacaaagcactaaaacgcgtgaacctcgtggtatcttttactagnnnnnnnn---------tactatatcagcctagttatgatcta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44852476 |
atgtaaatgtaaatacaaagcactaaaacgcgtgaacctcgtggtatcttttactagaaaaaaaaaaataaaaatactatatcagcctagttatgatcta |
44852377 |
T |
|
| Q |
208 |
gtttaaaatgattctctaccatttgaattaactttttatatgagagcaccaaaataaatgtatattacagannnnnnnnnnnnnnngtttcttaatgtat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44852376 |
gtttaaaatgattctctaccatttgaattaactttttatatgagagcaccaaaataaatgtatattacagatttttttttttttt-gtttcttaatgtat |
44852278 |
T |
|
| Q |
308 |
tctcaatgcataaattttaatttatatttataagaatcaaagatcaaatttctgatcagacgtttaaaagactctaggcgtttatcacttagaccacaca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44852277 |
tctcaatgcataaattttaatttatatttataagaatcaaagatcaaatttctgatcagacgtttaaaagactcaaggcgtttatcacttagaccacaca |
44852178 |
T |
|
| Q |
408 |
aatttggtataacccattgattgtgaaacatcattcaaaagttacatgcaatcattcaagatttctcaaaagattgattttgtctaccactaatttcttc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44852177 |
aatttggtataacccattgattgtgaaatatcattcaaaagttacatgcaatcattcaagatttctcaaaagattgattttgtctaccactaatttcttc |
44852078 |
T |
|
| Q |
508 |
tcaccacagcatagctatgaactacacgcattcatgtttgtgaactatccataacaaaactttaaattgcagtcgcagttacttcataatttttaatact |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44852077 |
tcaccacagcatagctatgaactacacgcattcatgtttgtgaactatccataacaaaactttaaattgcagtcgcagttacttcataatttttaatact |
44851978 |
T |
|
| Q |
608 |
attgatagtca |
618 |
Q |
| |
|
||||||||||| |
|
|
| T |
44851977 |
attgatagtca |
44851967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University