View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11063_low_4 (Length: 514)
Name: NF11063_low_4
Description: NF11063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11063_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 44851482 - 44851955
Alignment:
| Q |
1 |
atagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctatgcacagttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851482 |
atagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctatgcacagttaa |
44851581 |
T |
|
| Q |
101 |
agaatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacgaggagcatttt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851582 |
agaatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacgaggagcatttt |
44851681 |
T |
|
| Q |
201 |
ttctgatgaaaggattcctgttgccccttcttgattgattcaagtgnnnnnnnnnnatgtgtctgttgtctagaagaatgtaacaaaatgtattgttcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851682 |
ttctgatgaaaggattcctgttgccccttcttgattgatt----------ttttttatgtgtctgttgtctagaagaatgtaacaaaatgtattgttcat |
44851771 |
T |
|
| Q |
301 |
atatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatcccttactgac |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44851772 |
atatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatcccatactgac |
44851871 |
T |
|
| Q |
401 |
acgcaatactacgtccctaccctttgtatacttacacgcaatatatgcgctaatgcaacagcagttgagattacatcatacaca |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851872 |
acgcaatactacgtccctaccctttgtatacttacacgcaatatatgcgctaatgcaacagcagttgagattacatcatacaca |
44851955 |
T |
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