View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11063_low_5 (Length: 397)
Name: NF11063_low_5
Description: NF11063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11063_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 27725800 - 27725418
Alignment:
| Q |
1 |
actccaacaaggacaaggcagtgaatatgaaacaaaattgaattcttattaatattttatttgcgttttagatgtaaaaactaaatgaactgacaaaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27725800 |
actccaacaaggacaaggcagtgaatatgaaacaaaattgaattcttataaatattttatttgtgttttagatgtaaaaactaaatgaactgacaaaatg |
27725701 |
T |
|
| Q |
101 |
tttgtctgtcaaaaacaaagatgaatcttcccaggtattttttgctacnnnnnnnnnnnnnnnnnnnnnnnttgagctcatggactccatcaacttcacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27725700 |
tttgtctgtcaaaaacaaagatgaatcttcccaggtattttttgctaaaaaaaaataaaacaaacaaaaaattgagctcatggactccatcaacttcacc |
27725601 |
T |
|
| Q |
201 |
aaccaaatcactactagctcaactcatccacacttcacttggattgcaagcgtcttcacaatatctggacaaccatcattgccaccggtgaaagttgctt |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27725600 |
aaccaaatcacta---gctcaactcatccacacttcacttggattgcaagcgtcttcacaacatctggacaaccatcattgccaccggtgaaagttgctt |
27725504 |
T |
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| Q |
301 |
tgaccattggaaccgaacaagttggttttcctaagcatagctgctcaaattacagtcacacagaacatgttatttatcaccttcat |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27725503 |
tgaccattggaaccgaacaagttggttttcctaagcatagctgctcaaattacagtcacacagaacatgttatttatcaccttcat |
27725418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 27737497 - 27737379
Alignment:
| Q |
1 |
actccaacaaggacaaggcagtgaatatgaaacaaaattgaattcttattaatattttatttgcgttttagatgtaaaaactaaatgaactgacaaaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
27737497 |
actccaacaaggacaaggcagtgaatatgaaacaaaattgaattcttataaattttttatttgtgttttagatgtaaaaactaaatgaactaacaaaatg |
27737398 |
T |
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| Q |
101 |
tttgtctgtcaaaaacaaa |
119 |
Q |
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||||| ||||||| ||||| |
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| T |
27737397 |
tttgtttgtcaaatacaaa |
27737379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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