View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11064_high_1 (Length: 633)
Name: NF11064_high_1
Description: NF11064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11064_high_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 209 - 633
Target Start/End: Original strand, 2618659 - 2619082
Alignment:
| Q |
209 |
caaaagcttgcaataactaacagcaaaagcttgaaatgaagttctgatttaatactttcaatttccatttcagttataatttaaaaagaatcaaaacaat |
308 |
Q |
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| T |
2618659 |
caaaagcttgcaataactaacaggaaaagcttgaaatgaagttctgatttaatactttcaatttccatttcagttataatttaaaa-gaatcaaaacaat |
2618757 |
T |
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| Q |
309 |
gctctttgtgtgactgtattgtagtgctaattgacactaacaaagtctacatttctttcagtgttccatgcagaaggggaatctgcaagacaccattaga |
408 |
Q |
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| T |
2618758 |
gctctttgtataactgtattgtagtgctaattgatactaacaaaggctccatttctttcagcgttccatgcagaaggggaatctgcaagacaccgttaga |
2618857 |
T |
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| Q |
409 |
attgacatcttctcaattgattgcaagtgaggtgtttccacttttcatagtgaaagctcttatctacccaggatcacttgcaaaggctattttcaagctg |
508 |
Q |
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| T |
2618858 |
attgacatgttctcaattgattgcaagtgaggtgtttccacttttcatagtgaaagctcttatctacccaggatccgttgcaaaggctattttcaagctg |
2618957 |
T |
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| Q |
509 |
aaaaccatcccaagttacagaaacttgttgcacaatttcaatacaaggacaatctctgccgtatcagaactccaacgcctagaggttgattactaactga |
608 |
Q |
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| T |
2618958 |
aaaacaatcccaagttacagaaacctgttgcacaatttcaatacaaggacaatctctgccgtatcagaactccaacgcctagaggttgcttactaactga |
2619057 |
T |
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| Q |
609 |
aaagaaaaacattggcttaacataa |
633 |
Q |
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| T |
2619058 |
aaagaaaaacaatggcttaacataa |
2619082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 2618081 - 2618216
Alignment:
| Q |
11 |
agcagagagcgagttattatactgatacggtgcagcagaatcgcttattatatgatgccattaaacatcaaattttcattagttggactccagctcctat |
110 |
Q |
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| T |
2618081 |
agcagagagtgagaaactatactgatacagagcagtagaactgcttattacatgatgccattaaacatcaaagtttcattagtt-gactccacctcctat |
2618179 |
T |
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| Q |
111 |
agggtgggtaaaattaaatacgggtggtgctagtaga |
147 |
Q |
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| T |
2618180 |
tgggtgggtaaaattaaatacggatggtgctagtaga |
2618216 |
T |
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