View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11064_low_3 (Length: 225)

Name: NF11064_low_3
Description: NF11064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11064_low_3
NF11064_low_3
[»] chr5 (1 HSPs)
chr5 (9-225)||(39184764-39184980)
[»] chr1 (4 HSPs)
chr1 (100-220)||(42373538-42373658)
chr1 (136-222)||(17032909-17032998)
chr1 (96-208)||(19597952-19598064)
chr1 (98-166)||(41919898-41919966)
[»] chr4 (2 HSPs)
chr4 (92-209)||(16501182-16501300)
chr4 (98-166)||(30963879-30963947)
[»] chr2 (3 HSPs)
chr2 (91-217)||(31902910-31903036)
chr2 (62-217)||(39339357-39339512)
chr2 (106-219)||(22886011-22886124)
[»] chr8 (4 HSPs)
chr8 (93-222)||(9519052-9519181)
chr8 (98-160)||(34866640-34866702)
chr8 (106-185)||(10551752-10551832)
chr8 (98-166)||(34389590-34389658)
[»] chr3 (3 HSPs)
chr3 (96-217)||(17501759-17501880)
chr3 (134-219)||(25595132-25595217)
chr3 (109-207)||(1653452-1653550)
[»] chr6 (1 HSPs)
chr6 (98-209)||(12793553-12793664)
[»] chr7 (6 HSPs)
chr7 (98-219)||(37792747-37792868)
chr7 (98-160)||(38484991-38485053)
chr7 (62-217)||(47326396-47326551)
chr7 (106-222)||(12480298-12480415)
chr7 (91-160)||(3420242-3420311)
chr7 (98-166)||(38305676-38305744)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 39184980 - 39184764
Alignment:
Q  9 ggtcagttccgcaggttaatggggttggttgtttactccggcgacatacgttttctccatgtcaccggcagctgcatttctctgatttaggttgtgattc 108  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39184980 ggtcagttccgcaggttcatggggttggttgtttactccggcgacatatgttttctccatgtcaccggcagctgcatttctctgatttaggttgtgattc 39184881  T
Q  109 cgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttgg 208  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39184880 tgcttcaaactggcgtcgttgcctatgttttgtagttgtgtttcgtcttcctatatatatgttttgtgttgctgtctgttttcttggtgaggcggtttgg 39184781  T
Q  209 cagcgtagtttttgctc 225  Q
    | |||||||||| ||||    
T  39184780 cggcgtagttttggctc 39184764  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 42373538 - 42373658
Alignment:
Q  100 ttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgag 199  Q
    ||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||    
T  42373538 ttgtgattccgcttcaaaccggtgtcgttgcccgtgttttgaagttgtgtttcgtcttcctatcgatctgttctatgttactgcctgttttcttggtgag 42373637  T
Q  200 gcggtttggcagcgtagtttt 220  Q
    | |||||| | ||||||||||    
T  42373638 gtggtttgacggcgtagtttt 42373658  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 17032909 - 17032998
Alignment:
Q  136 ttttgtagttgtgtttcgtcttcctatagatatgtt---ttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagtttttg 222  Q
    |||||| ||||  |||||||||||| |||||||||    || ||||||||  ||||||||||||||| ||||||||||| ||||||||||    
T  17032909 ttttgttgttggatttcgtcttcctctagatatgtgatattatgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttg 17032998  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 19597952 - 19598064
Alignment:
Q  96 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 194  Q
    ||||||||| |||| ||||| || ||||||||||||| |||| ||| |||| ||||| ||||||| | | | ||| |||| ||||||| ||| |||||||    
T  19597952 taggttgtgtttccacttcagaccggcgtcgttgcccgtgttctgttgttgggtttcatcttccttttggtttgtgtttgggttgctgcctg-tttcttg 19598050  T
Q  195 gtgaggcggtttgg 208  Q
    | |||| |||||||    
T  19598051 gcgaggtggtttgg 19598064  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 41919898 - 41919966
Alignment:
Q  98 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 166  Q
    ||||||| |||||||||||||  |||||||||||| |||||||| || |  |||| ||||||| |||||    
T  41919898 ggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagat 41919966  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 16501182 - 16501300
Alignment:
Q  92 gatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgtttt 190  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||| ||| ||||  ||| |||||||| || || ||| ||||||| || |||||||||    
T  16501182 gatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctctaaatttgtgtttgtgtggccgtctgtttt 16501281  T
Q  191 cttggtgaggcggtttggc 209  Q
    |||||||||||||||||||    
T  16501282 cttggtgaggcggtttggc 16501300  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 30963879 - 30963947
Alignment:
Q  98 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 166  Q
    ||||||| |||| |||||||| ||||||| ||||| |||||||| ||||  |||||||||||| |||||    
T  30963879 ggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagat 30963947  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 31903036 - 31902910
Alignment:
Q  91 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttt 189  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||| ||||| | | || |||||||||| || ||    
T  31903036 tgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgctgtttg-tt 31902938  T
Q  190 tcttggtgaggcggtttggcagcgtagt 217  Q
    ||||| ||||||  |||||| |||||||    
T  31902937 tcttgctgaggctatttggcggcgtagt 31902910  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 39339512 - 39339357
Alignment:
Q  62 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 161  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||| | ||||| ||| | |||||||| ||||  |||| |||||||     
T  39339512 tctccttgtcaccggcggccgcctttctatgattttggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctc 39339413  T
Q  162 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 217  Q
    ||||| | | |||||||||||||||| |||||||||||||  ||||||| |||||||    
T  39339412 tagatctatatttgtgttgctgtctg-tttcttggtgaggatgtttggcggcgtagt 39339357  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 22886124 - 22886011
Alignment:
Q  106 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttt-tgtgttgctgtctgttttcttggtgaggcggt 204  Q
    |||||||||| |||||||||| |  || |||||||| |||| ||||| ||||||| | |||||||   ||||||||||  ||||| |||||||||| |||    
T  22886124 ttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcctcttgatatgtaactgtgttgctgcttgttt-cttggtgaggtggt 22886026  T
Q  205 ttggcagcgtagttt 219  Q
    ||||| |||| ||||    
T  22886025 ttggcggcgtggttt 22886011  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 9519052 - 9519181
Alignment:
Q  93 atttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttc 191  Q
    |||| ||||||| | |||||||||||  |||||| ||||| |||||||| |||| |||||||||| || ||||| ||| ||||| ||||||| |||||||    
T  9519052 atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctttctctagatttgtgtttgtattgctgt-tgttttc 9519150  T
Q  192 ttggtgaggcggtttggcagcgtagtttttg 222  Q
     |||||||| || ||||| | ||||||||||    
T  9519151 atggtgaggtgggttggcggtgtagtttttg 9519181  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 34866702 - 34866640
Alignment:
Q  98 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 160  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||    
T  34866702 ggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcct 34866640  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 10551752 - 10551832
Alignment:
Q  106 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtct 185  Q
    ||||||||||||  ||||||| ||||| || ||||| |||| ||||||||||||| ||||| | | |||||||||||||||    
T  10551752 ttccgcttcaaatcggcgtcgctgcccgtgctttgttgttgggtttcgtcttcctctagatctatgtttgtgttgctgtct 10551832  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 34389658 - 34389590
Alignment:
Q  98 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 166  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| || |  ||||||| |||| |||||    
T  34389658 ggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagat 34389590  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 17501880 - 17501759
Alignment:
Q  96 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 194  Q
    ||||||||| ||||||||||||||| |||| ||| || |||||||| |||   |||||||||||| ||||| | | |||||||||||  || |||| |||    
T  17501880 taggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttcctatttt-ttg 17501782  T
Q  195 gtgaggcggtttggcagcgtagt 217  Q
    ||||||  |||||||||||||||    
T  17501781 gtgaggatgtttggcagcgtagt 17501759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 25595217 - 25595132
Alignment:
Q  134 tgttttgtagttgtgtttcgtcttcctatagatatgtttt-gtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttt 219  Q
    |||||||| ||| ||||||||| |||| ||||| |||||| |||||||||  ||||| |||||||||||||||||||| ||||||||    
T  25595217 tgttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagttt 25595132  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 1653550 - 1653452
Alignment:
Q  109 cgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct--atagatatgttttgtgttgctgtctgttttcttggtgaggcggttt 206  Q
    |||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||  |||  |||| |||||||||||| ||| |||||| |||||| |||||    
T  1653550 cgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcctccatatttatg-tttgtgttgctgcctg-tttcttcgtgaggaggttt 1653453  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 12793553 - 12793664
Alignment:
Q  98 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatat-gttttgtgttgctgtctgttttcttggt 196  Q
    ||||||| || |||||||||||||||||||||||| |||||||  | ||  |||||||||||| | ||| |   |||||||||||||||| |||||||||    
T  12793553 ggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcctctggatctaaatttgtgttgctgtctg-tttcttggt 12793651  T
Q  197 gaggcggtttggc 209  Q
    ||||  |||||||    
T  12793652 gagggtgtttggc 12793664  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 37792747 - 37792868
Alignment:
Q  98 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttggt 196  Q
    ||||||| ||||||||||||| |||||||||| || |||||||  |||| ||||| |||| || | |||  || |||||||||||||||| |||||||||    
T  37792747 ggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctttctcttgatccgtgtttgtgttgctgtctg-tttcttggt 37792845  T
Q  197 gaggcggtttggcagcgtagttt 219  Q
      |  |||||||| |||||||||    
T  37792846 tggctggtttggcggcgtagttt 37792868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 38484991 - 38485053
Alignment:
Q  98 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 160  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||| ||   |||||||||||||    
T  38484991 ggttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtcaggtttcgtcttcct 38485053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 47326551 - 47326396
Alignment:
Q  62 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 161  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||  || |||| ||||| |||||||| ||||  |||| |||||||     
T  47326551 tctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctc 47326452  T
Q  162 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 217  Q
    |||||   | ||||||||||||  ||||| ||||||||||  ||||||| |||||||    
T  47326451 tagatcaatatttgtgttgctgcttgttt-cttggtgaggatgtttggcggcgtagt 47326396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 12480298 - 12480415
Alignment:
Q  106 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttc-gtcttcctatagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 203  Q
    |||| |||||||| ||||||| ||| | |||||||| ||||  |||| |||||||| | ||| ||| ||||||| ||  |||||||||||||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttcagtcttcctct-gatctgtatttgtgtggccatctgttttcttggtgaggcgg 12480396  T
Q  204 tttggcagcgtagtttttg 222  Q
    |||||| |  |||||||||    
T  12480397 tttggcggaatagtttttg 12480415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 3420311 - 3420242
Alignment:
Q  91 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 160  Q
    |||| ||||||||| ||||||||| ||| ||||||| ||| | |||||||| |||  |||||||||||||    
T  3420311 tgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgttttgttgtttggtttcgtcttcct 3420242  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 38305676 - 38305744
Alignment:
Q  98 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 166  Q
    ||||||| ||||||||||||| ||||| | ||||  |||||||| ||||  |||||||||||| |||||    
T  38305676 ggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagat 38305744  T

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