View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11065_high_6 (Length: 305)
Name: NF11065_high_6
Description: NF11065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11065_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 11119404 - 11119116
Alignment:
| Q |
14 |
attctgaggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaat |
113 |
Q |
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| T |
11119404 |
attctgaggtcacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaat |
11119305 |
T |
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| Q |
114 |
attacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgtt |
213 |
Q |
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| T |
11119304 |
attacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgtt |
11119205 |
T |
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| Q |
214 |
gagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
302 |
Q |
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| T |
11119204 |
gagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtcgaatttatcgggagttgttgg |
11119116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 11111628 - 11111345
Alignment:
| Q |
19 |
gaggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattac |
118 |
Q |
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| T |
11111628 |
gaggccacaatgccaagatccaattcagaagatttcttgttaataaaattgcattgttttctaatttctcctttctttccggtaagcacatcaatattac |
11111529 |
T |
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| Q |
119 |
ccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaa |
218 |
Q |
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| T |
11111528 |
ccattttaatcattgaatttataaagttctgaaagaaaacattttggctatttgcaaagctgttgacaatgctaatggtatctgcacccggtgttgagaa |
11111429 |
T |
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| Q |
219 |
caattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
302 |
Q |
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| T |
11111428 |
taattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgg |
11111345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 31 - 302
Target Start/End: Original strand, 10793178 - 10793449
Alignment:
| Q |
31 |
gcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatca |
130 |
Q |
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| T |
10793178 |
gcaagatctaactcagaagattttttgttaacaaaattgcattgtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatca |
10793277 |
T |
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| Q |
131 |
ttgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtc |
230 |
Q |
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||| || ||||| ||| |||||| || ||||||| || ||||||| || ||||||||| ||||||||||| |||||||| |||||||||||||| |
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| T |
10793278 |
ttgctttcttaaagctctcaaagaaagcactttggttattggcaaagttattaacaatgctagtggtatctgcatttggtgttgaaaacaattcttggtc |
10793377 |
T |
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| Q |
231 |
actttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
302 |
Q |
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| T |
10793378 |
actttgaagcaaaccctttttaacctgaagattgttgtagaagttcttgtccaatgtatcaggagtagttgg |
10793449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 57 - 302
Target Start/End: Complemental strand, 11156842 - 11156597
Alignment:
| Q |
57 |
gttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa |
156 |
Q |
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||||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| | ||||| ||| |||||| |
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| T |
11156842 |
gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa |
11156743 |
T |
|
| Q |
157 |
acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttacctt |
256 |
Q |
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| T |
11156742 |
gcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcactt |
11156643 |
T |
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| Q |
257 |
gaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
302 |
Q |
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| T |
11156642 |
gaagattggagtaatagttcttgtcaaatttatcaggagtcgttgg |
11156597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 58 - 302
Target Start/End: Complemental strand, 11137899 - 11137655
Alignment:
| Q |
58 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
157 |
Q |
| |
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|||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||||||||||||||||| | | |||| | | |||||| |
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| T |
11137899 |
ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcatggcggcttcaaagctatcaaagaaag |
11137800 |
T |
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| Q |
158 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
257 |
Q |
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| T |
11137799 |
catttttgtcagcactgaacttgttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctg |
11137700 |
T |
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| Q |
258 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
302 |
Q |
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||||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
11137699 |
aagattggagtagtagttcttgtcaaatttatcaggagtcgttgg |
11137655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 173 - 302
Target Start/End: Complemental strand, 11146089 - 11145960
Alignment:
| Q |
173 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
272 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || |
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| T |
11146089 |
caaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaata |
11145990 |
T |
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| Q |
273 |
gttcttgtctaatttatcaggagttgttgg |
302 |
Q |
| |
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| T |
11145989 |
gttcttgtcaaatttatcaggagtagttgg |
11145960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 302
Target Start/End: Complemental strand, 11150173 - 11149929
Alignment:
| Q |
58 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
157 |
Q |
| |
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|||||||| ||||| || |||||||| ||||||| || ||||| | ||| |||||||| |||||||| ||||| | | ||||| ||| || ||| |
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| T |
11150173 |
ttaacaaagttgcattgttttctaatctctccttgtttcccagttaacacaccaatatttcccattttgatcatagcagccttaaagctctcaaaaaaag |
11150074 |
T |
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| Q |
158 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
257 |
Q |
| |
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| T |
11150073 |
ctttttgatcggttgcaaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatcactttggagcaaaccctttttcacttg |
11149974 |
T |
|
| Q |
258 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
302 |
Q |
| |
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|||||| ||| ||||||||||| |||||||||||||| ||||| |
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| T |
11149973 |
aagattagagtaatagttcttgtcaaatttatcaggagtcgttgg |
11149929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 11183613 - 11183671
Alignment:
| Q |
192 |
aatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt |
250 |
Q |
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||||||||| ||||| ||||| || ||||||||||||||||| |||| ||| ||||||| |
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| T |
11183613 |
aatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaacccctttt |
11183671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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