View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11066_high_6 (Length: 455)
Name: NF11066_high_6
Description: NF11066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11066_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 453
Target Start/End: Original strand, 32919787 - 32920220
Alignment:
| Q |
8 |
gagcagagacacacaccacaaacatcttgtcacagaaggtgatgtagagcagagtcagtgtcagtatcactgtcagtcccgatcttggattgctgttgtg |
107 |
Q |
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| T |
32919787 |
gagcagagacacacaccacaaacatcttgtcacagaaggtgatgtagagcagagtcagtgtcagt------------cctggtcttggattgctgttgtg |
32919874 |
T |
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| Q |
108 |
tttacgaaccggtcgcaaaacaaaccctagttaattagggaaaggtggattttgtttttataaagtgagccaaccctttatccgaccctaaaacttaaaa |
207 |
Q |
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| T |
32919875 |
tttacgaaccggtcgcaaaacaaaccctagttaattagggaaaggtggattttgtttttataaagtgagccaaccctttatccgaccctaaaacttaaaa |
32919974 |
T |
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| Q |
208 |
cctagttgcgcaaggatgggaagaattgttcggtcccaccttcaaccttgcaatcccacatatcttttgacattccgttcgtaggtgtagctcagcatgg |
307 |
Q |
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| T |
32919975 |
cctagttgtgcaaggatgggaagaattgttcggtcccaccttcaaccttgcaatcccacatatcttttgacattctgttcgtaggtgtagctcagcatgg |
32920074 |
T |
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| Q |
308 |
aaacatggttgaggatcataaaattgaacatgattctacgagcaccccnnnnnnncccgacaacatgatcaagagccaattttacaatgtattttcagta |
407 |
Q |
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| T |
32920075 |
aaacatggttgaggatcataaaattgaacatgattctacgagcacccctttttttcccgacaacatgatcaagagccaattttacaatggattttcagta |
32920174 |
T |
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| Q |
408 |
tggatgcgtgtttaaacatgcataacttattaagttatctgtgctg |
453 |
Q |
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| T |
32920175 |
tggatgcgtgtttaaacatgcataacttattaagttatctgtgctg |
32920220 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 452
Target Start/End: Complemental strand, 52388738 - 52388652
Alignment:
| Q |
366 |
gacaacatgatcaagagccaattttacaatgtattttcagtatggatgcgtgtttaaacatgcataacttattaagttatctgtgct |
452 |
Q |
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|||||||||||||||||||| |||||||||| | ||| ||| ||||| | ||||||| ||||||||||||||| ||||||||||| |
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| T |
52388738 |
gacaacatgatcaagagccagttttacaatggagttttagtgcggatgtggatttaaacgtgcataacttattaatttatctgtgct |
52388652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 293
Target Start/End: Complemental strand, 52388868 - 52388774
Alignment:
| Q |
199 |
aacttaaaacctagttgcgcaaggatgggaagaattgttcggtcccaccttcaaccttgcaatcccacatatcttttgacattccgttcgtaggt |
293 |
Q |
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| T |
52388868 |
aacttaaaccccagttgcgcaaggatgggaagaatcgttccatcccaccttcaacctcgtgatcccacgtatatttcgatattccgttcctaggt |
52388774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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