View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11066_high_9 (Length: 270)
Name: NF11066_high_9
Description: NF11066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11066_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 11237758 - 11237998
Alignment:
| Q |
11 |
catagggaatgttgggcattgtccttataccaatgcactttatgttactgaggatgatcaggtgctgctggagaatcagttcgagttggtcgtttacaat |
110 |
Q |
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| T |
11237758 |
catagggaatgttgggcgttgtccttataccaatgcactttatgttactgaggatgatcaggtgctgctggagaatcagttcgagttggtcgtttacaat |
11237857 |
T |
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| Q |
111 |
tctagagatggtacttctaaaactcttgaatttccaaacatcaaaggttggatggtccttgaagtctaccaagagagtttgatatcaccatgttcttaat |
210 |
Q |
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| T |
11237858 |
tctagagatggtacttctaaaactcttgaatttccaaacatcaaaggttggatggtccttgaagtctaccaagagagtttgatatcaccatgttcttaat |
11237957 |
T |
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| Q |
211 |
aatagtagaatgcatgtagtaatgaggatgttatatgctat |
251 |
Q |
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| T |
11237958 |
aatagtagaatgcatgtagtaatgaggatgttatatgctat |
11237998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 7168657 - 7168478
Alignment:
| Q |
30 |
tgtccttataccaatgcactttatgttactgaggatgatcaggtgctgctggagaatcagttcgagttggtcgtttacaattctagagatggtacttcta |
129 |
Q |
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| T |
7168657 |
tgtccttataccaaggcactttatcttactgaggatgaccaagtgttgctcaagtatcaagctgagttggttgtttacaattctagagatggtacgttta |
7168558 |
T |
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| Q |
130 |
aaactcttgaatttccaaacatcaaaggttggatggtccttgaagtctaccaagagagtttgatatcaccatgttcttaa |
209 |
Q |
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| T |
7168557 |
aaactcctgaaattcaacacatcaatcggtggttggtccctcaagtttatcaggagagtttgatatcaccttgttcttaa |
7168478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 7199944 - 7199764
Alignment:
| Q |
31 |
gtccttataccaatgcactttatgttactgaggatgatcaggtgctgctggagaatcagttcgagttggtcgtttacaattctagagatggtacttctaa |
130 |
Q |
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||||||||||||| ||| |||||||| |||||||||||| |||||||| ||| ||||| ||||||| ||||||||||||| |||||||||| ||| |
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| T |
7199944 |
gtccttataccaaggcattttatgtttatgaggatgatcaagtgctgctagagtgtcagtcaaagttggttctttacaattctagggatggtacttttaa |
7199845 |
T |
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| Q |
131 |
aactcttgaatttccaaacatcaaaggttggatggtccttgaagtctaccaagagagtttgatatcaccatgttcttaata |
211 |
Q |
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| T |
7199844 |
gagtcttgaaatccaaagcacagatggttggatggttccacaagtctaccaacagagtttgatatcactttgttcttaata |
7199764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 7174338 - 7174233
Alignment:
| Q |
32 |
tccttataccaatgcactttatgttactgaggatgatcaggtgctgctggagaatcagttcgagttggtcgtttacaattctagagatggtacttctaaa |
131 |
Q |
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||||||||| || |||||||||||| |||||||||||| |||||||| ||| || | | ||||||| ||||||||||||||||||||||||| ||| |
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| T |
7174338 |
tccttatacaaaggcactttatgtttatgaggatgatcaagtgctgctagagtatatgatgaagttggttgtttacaattctagagatggtacttttaag |
7174239 |
T |
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| Q |
132 |
actctt |
137 |
Q |
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|||||| |
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| T |
7174238 |
actctt |
7174233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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